Setaria viridis (green foxtail): 117845438
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Entry
117845438 CDS
T07951
Name
(RefSeq) ATP-dependent helicase BRM isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117845438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117845438
03036 Chromosome and associated proteins [BR:
svs03036
]
117845438
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117845438
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
117845438
Chromatin remodeling factors
BAF complex
117845438
PBAF complex
117845438
GBAF(ncBAF) complex
117845438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
QLQ
Bromodomain
AAA_14
Motif
Other DBs
NCBI-GeneID:
117845438
NCBI-ProteinID:
XP_034582376
LinkDB
All DBs
Position
2:31758264..31768096
Genome browser
AA seq
2154 aa
AA seq
DB search
MTHNHEQQQAHQSGAPHGMMGPGGSNFPQSSSPMPPVQSQMNLPPSSGPQGMVGGQVHNQ
VAMQQQYLKLAMLQQQQQQKVAHGMLLQQQAKLNMLGSSSRDQDMVNNPAKMQELMALQA
QMFKRQAEHLQQAEKQKEQGQPSSDEQRSRDMRPTMAPLGVPGQQLPSAGMMRPMQPMQG
QVGISSAGGGPLTPLQFQAVQAWAKENNFDLSNPANMSAVSQLLPIWQSSRMAAMQKQNE
ASMAAQQQATPSQMNSDTPGCGNVPNQGAPSKPGQPLPPSSVSGGEEAKVVNLSNLQLQQ
QLSAHNRDGSNERAVRSPVTAGDGAQMMMHTPQSSGHVNKVPEQSTPKNALANSEAMQVQ
HVRQMQQLNQAAAPTASPGETGGSQAPIPSARLQPGQTGFTKNQLHVLKAQILAFRRLKR
GDRTLPPEVLELIVSGRSPPDSQGQQISGPQAIHNCERPGVSNADEHGRHIESGDKVPEK
PALLKGPCLSKVEASASEDKASPASVPGPMQVMKASPKESLKIGPVSVPEHSNTTMIKSE
HEIEQCVQRTPRSDYSSERGKSLPAESGSADAEQAKRAGSTSSAPPPRDVPRKYHGPLFD
SPSFTRRHDSLGSANYNSNLSLGYDVKDLLAQEGLIVLDKKREDNLKKISSLLAINLERK
RIRPDLVLRLQIEEKKLKLLEHQARLRDEVEHEQQEIMAMPDRIYRKFVRQCERQRVELA
RHVQQMQKASREKQLKSIFQWRKKLLEAHWAIRDARITRNRGVAKYHERMLREFSKRKDD
DRNKRMEALKNNDVERYRQILLEQQTSVPGDAAQRYNVLSSFLTQTEEYLYKLGGKITAT
KSQQQIEEAANAAAAAARAQGLSEEEVKAAAQCAGQEVMIRNTFSEMNAPRDNTSVNKYY
TLAHAVSERVTKQPSLLRAGTLREYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMAL
IAYLMEFKGNYGPHLIIVPNAVLVNWKSELLNWLPSASCIFYVGAKDQRQKLFSQEVLAM
KFNVLVTTYEFVMFDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGT
PLQNDLKELWSLLNLLLPEVFDSSKAFQDWFSKPFQRDGPTHSEEDDWLETEKKVIIIHR
LHQILEPFMLRRRVEDVEGSLPRKDSIVLRCRMSAVQGAIYDWIKSTGTIRVDPEDEKMR
AQRNPMYQFKTYKNLNNKCMELRKVCNHPLLSYPFLNHGKDFMIRSCGKLWNLDRILIKL
HKAGHRVLLFSTMTKLLDIMEDYLQWRRLVYRRIDGTTSLEDRESAIVDFNRPGSDCFIF
LLSIRAAGRGLNLQSADTVVIYDPDPNPQNEEQAVARAHRIGQTREVKVIYMEAVVDNIS
SYQKEDELRNGGSGDLEDDLAGKDRYMGSIESLIRNNIQQYKMDMADEVINAGRFDQRTT
HEERRMTLETLLHDDERYQETVHDVPSLQEVNRMIARTEREVELFDQMDEDFDWTGDMMK
HHQVPKWLRASSTEVDAVVASLSKKPLRNMSSGGIALDTNDTPEKRRGRPKGTGKYSIYR
EIDDEDLEESDEGSEERNTTPLPEDGEIEEFEDEEDNDDSVPDNKDESEEEEPINDDGYN
FTNGLRSRKAIRMEEAGSTGSSSGSRRLPPPAPSSSSKKLRSLSALDARPGSLSRRTLDD
LEEGEIAMSGDSHMDLQQSGSWNHERDDGEDEHVLQPKIKRKRSIRIRPRLNAEKQEARS
GGEAVFPQRGTHHAFQGSDDYNSQFKSDLDSHAFADPAARQQDAVHPMVKQKRNMPSRKV
SPAPRTGKSTYLCGSGEGSVERSKENWSSKAMDSSTPEFRGTKMSDSMQRKCKNVISKLW
RRIDKEGHQIIPNISSWWRRNENSSFRGPSCSTLDLQKIEQRVDGFEYSSVTEFIGDMQQ
MLKSVVQHFSYRHEVQIEAETLHNLFFNIMNIAFPDSDFSEAKNAMSFSNPGRAASGTAG
PSTKHAALGHKRRASTSEAEQHGSGHIRHNQSSEVPSRPHSSRSEIDSRHSGSGSRDQLP
DGAGLLHPSDMFIVKKKRQERARSSIGSPSSSGRAGRLSPTNPVRLGTVPSPRGARTPFQ
RDAHPSQHSVHSTGWIVHSDHGGSSSAPGIGDIQWAKPSKRQRTDAGKRRPSHL
NT seq
6465 nt
NT seq
+upstream
nt +downstream
nt
atgacgcataaccatgaacagcagcaagcacaccaatccggtgcgccccatggcatgatg
gggccaggcggcagtaacttccctcagtcctccagcccaatgcccccggtccagagtcag
atgaacttgccgccatccagcggaccacaaggcatggttggaggtcaggtgcacaaccag
gttgcgatgcagcaacaatacctgaagcttgcgatgctgcagcagcagcagcagcagaag
gtggcccacgggatgctcctccagcagcaggccaagttgaatatgctggggtcatcgtca
agagaccaagatatggttaacaaccctgccaagatgcaggagcttatggcccttcaggca
cagatgtttaagcgacaagctgaacatcttcagcaggcggagaagcagaaagagcaggga
caaccaagtagtgatgagcaaagaagccgtgatatgaggccaactatggctcctctggga
gtccctggacagcagttgccatcagcgggtatgatgaggcccatgcaaccaatgcaaggc
caggtgggcattagcagcgccggtggtggcccattaacgccattgcagtttcaagccgtg
caagcctgggcaaaggagaacaatttcgacctgtccaatcctgcaaacatgagtgcagtt
tctcaactcctgccaatctggcagtcaagcaggatggcagccatgcagaagcagaatgag
gcaagtatggctgcacagcagcaagcaacgccctcgcaaatgaacagtgataccccaggg
tgtggtaatgttcccaatcagggtgccccatcgaagcccggtcagccccttcccccaagc
tcagtttctggtggagaagaggctaaggtagtgaatttgagcaacttgcagttgcaacaa
cagttatctgcccataacagggatggctcaaatgaaagggctgtgaggtcacctgtgaca
gcgggcgatggtgcacagatgatgatgcataccccgcaaagctctggacatgtgaataag
gttcctgagcaatccactccaaaaaatgcccttgcaaattcagaagcgatgcaggtgcag
catgtgagacagatgcagcaacttaaccaagctgctgcccccacagcatcccctggtgaa
acaggaggatcacaagccccaattccaagtgctcggctgcaaccagggcaaacaggtttc
acaaaaaatcaacttcatgtactcaaagctcagatattagcttttcggcgtttaaagcgt
ggtgatcgtactctcccgccagaagttcttgaattaattgtgtctgggcggtctcctcct
gattcacaagggcagcagatttctggacctcaggcaatacataactgtgaaaggcctggt
gtaagcaatgctgatgaacatggaaggcacattgagagtggtgataaagttcctgaaaaa
cctgcattgttgaagggaccatgtttatcaaaggtggaggcttcagcttcagaagataaa
gctagtcctgccagtgttcctggtcccatgcaagtgatgaaagcttcaccgaaagagtct
cttaaaattggaccagtttcagtaccagagcatagtaacactactatgattaaatctgag
cacgaaatagaacagtgtgtccagagaacacctagaagcgattacagttctgagaggggt
aaatctttaccggcagaaagtggttcagcagacgctgagcaggcaaaaagggctggctcc
acaagcagtgccccacctccaagagacgttcctagaaaataccatggtccgctatttgat
tccccgtccttcactaggaggcatgattccttaggatctgcaaactacaacagtaatctc
tcactaggttatgatgttaaagatttattagctcaagaagggttgatcgttcttgataag
aaacgtgaggataacttgaaaaagataagcagtttgcttgcaatcaatctagagaggaaa
agaatccgtcctgatcttgtcttgaggctacagattgaagagaagaaactcaaactccta
gaacatcaggctcggctaagggatgaagttgagcatgagcaacaagaaataatggcaatg
ccagataggatatacagaaagtttgtcagacaatgtgaacgtcaacgggttgagcttgca
agacatgttcagcagatgcagaaagcctcgagagagaagcagctgaaatcaattttccag
tggcgcaagaagcttctggaggcacattgggccattcgcgatgctcgaataactcgtaat
agaggggtggccaagtaccatgaaaggatgttgcgagaattctcgaaaaggaaagatgat
gataggaacaaaagaatggaggcattgaaaaacaatgacgtggaaagataccgtcaaata
cttttggaacaacaaactagtgttcctggtgatgcagctcaaagatataatgttctatct
tctttcctgacccagactgaagagtacctttataagcttggaggaaaaataactgctacc
aagagtcagcaacaaatagaagaagcagcaaatgctgctgcagcagctgcacgggcacag
ggtctatctgaggaagaagtgaaggctgctgcacaatgtgctggtcaggaggttatgata
aggaacacgttctctgagatgaatgcaccaagggataatacatctgttaacaagtactat
actttggctcatgctgtgagtgagagagttacaaagcagccatcgctgttgcgagcagga
actttaagggagtaccagttggtgggcctgcagtggatgctttctttgtacaataataag
ttgaatggtattttggctgatgagatgggtcttggcaagactgtgcaggttatggcattg
atcgcatacctgatggagtttaaagggaattatggcccacatctcataatagtgccaaat
gctgtcttggtcaattggaagagtgaactgctaaattggctgccatctgcatcttgcatc
ttttatgttggtgcaaaggaccaaaggcagaagctgttctctcaagaggttttggccatg
aaatttaatgttcttgttacgacatatgaatttgttatgtttgatcgttccaagctttca
aagattgattggaagtacattataattgatgaggcacagcggatgaaggatagagactca
gtcttggcacgtgatcttgatcgctatcgttgccaacgacgcctccttctcactggtact
cctctacagaatgatctcaaggagctttggtccctcttgaatctgttgcttccagaagta
tttgatagtagtaaggcattccaagattggttctctaagccgtttcagagggatggtccg
acacacagtgaagaagacgattggcttgagacagagaagaaagtaataatcattcacaga
ttgcatcagattttggaacctttcatgctacgtagacgtgtggaagatgttgaaggctca
cttccacgaaaggattccattgtcttgaggtgcagaatgtctgcggttcaaggagctata
tatgattggatcaaatctaccggtactattagagttgatcctgaagatgagaaaatgcgt
gcacaaaggaatcccatgtaccagttcaagacatacaagaatctcaacaacaagtgcatg
gagctaagaaaagtttgtaaccatcctcttctgtcatatccattcttgaatcatgggaaa
gattttatgatcagatcttgcgggaagttatggaatcttgatagaattttaattaagctt
cataaggcaggccatcgtgttctcctttttagcacaatgacgaaacttcttgacatcatg
gaagactatttgcaatggaggcgacttgtttacaggcgcattgatggaacaacaagcttg
gaagatcgagagtcggcgatcgttgacttcaacaggcctggttctgattgttttatattc
ttgcttagtattcgtgctgccggtagggggctgaatcttcagagcgcagacacggttgta
atatatgaccctgatccaaatccacaaaatgaagagcaagcagttgctagggcccatcgt
atagggcagactagggaggtaaaggttatttacatggaggctgttgtcgataacatatca
agttatcagaaagaggatgagttgagaaatggtgggagtggagatttggaggatgatctt
gctgggaaagacaggtacatgggatcaattgaaagtctcatccgcaacaatatccaacaa
tacaaaatggatatggcggatgaggtcattaatgctggtcgttttgatcaaagaacaacc
catgaggaaaggcggatgactttggagacactcctgcatgatgatgagagataccaagaa
actgtccatgatgtgccttcattacaggaagtgaaccgaatgattgctaggactgaacgt
gaagttgaactttttgaccagatggatgaagactttgattggacgggggatatgatgaaa
catcatcaggttccaaagtggctccgtgcaagctccactgaagtagatgctgttgtggca
agtctatccaaaaagccgttgaggaatatgtcgtctggtggcattgctttagacactaat
gatacacctgagaagagaagggggcggccaaagggtactggcaagtactccatctacagg
gagattgacgacgaagatcttgaagaatctgatgaaggttctgaggagaggaataccaca
cccctgcctgaagatggggaaatagaggaattcgaagatgaagaggacaatgatgattcg
gtacctgataacaaggatgaatcagaggaagaagagccaatcaatgatgatgggtacaat
tttaccaatggattaagaagcagaaaagctattaggatggaagaagctggttccacgggc
tcttcttctggaagcaggagattaccaccacctgcaccttcctcttcgtcaaaaaaattg
cggtctctatctgcattagatgcccggcctggttctttgtcaaggagaactctggatgac
ctggaggaaggtgagattgcaatgtcaggggactcgcatatggacctccagcagtcaggg
agctggaatcatgaacgtgatgacggtgaggatgagcatgtgttgcaaccaaaaataaaa
cgcaaacggagtattcgtattcgtccaagactgaatgcagaaaagcaggaagctagatct
ggtggagaagcggtcttccctcagcgtggtactcatcatgcatttcaaggcagtgatgat
tataattcacaatttaagtctgacctagattcacatgcttttgctgatccagctgccagg
cagcaagacgctgttcatcctatggtcaaacagaagcgcaacatgccatctaggaaggtt
tcgcctgctcctagaacagggaaatcgacttacttgtgtggatccggggaaggatctgtt
gaacgctccaaggaaaattggagcagtaaggccatggactcttctaccccagagttccgt
ggcacaaagatgtctgacagtatgcaaagaaagtgcaagaatgtgataagcaagctttgg
aggaggattgacaaagagggtcatcaaatcatacctaatatatcttcttggtggcggagg
aatgaaaattcctcattcagaggtccatcttgcagcacccttgacctacagaaaattgaa
cagcgagttgatggattcgagtatagctctgtaactgagttcataggggacatgcagcag
atgttgaagagtgtggttcagcatttcagctataggcatgaggtacagatagaagctgag
accctccataacttatttttcaacataatgaatattgcgttcccagactcggacttcagc
gaagctaagaatgcaatgtcattttcaaatcctggaagagctgcaagtggcactgctggg
ccatcaacaaagcatgctgctttaggccataagcgccgtgctagcaccagtgaagcggag
cagcatggctcaggacatatcaggcataatcagtctagcgaggttcctagtcggcctcac
agttccagatcagagatagactcgaggcattctggatccggcagccgagatcagctccca
gatggtgctgggttattgcacccgagcgatatgttcattgttaagaagaaaaggcaagaa
cgggcaaggagcagcattgggtctccgtctagctcaggacgagctggacggctctcgcca
accaaccctgtgcggctgggcacagtgccctcacccagaggtgccaggacgccattccaa
agggatgcacatccatctcagcactcggtgcattccactgggtggattgtgcattcggat
catgggggaagttcctcagcacctggcattggagacatccaatgggccaagccatccaag
cgacaaaggactgacgctggcaagaggcggccgagccatttgtga
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integrated database retrieval system
