Setaria viridis (green foxtail): 117846948
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Entry
117846948 CDS
T07951
Name
(RefSeq) uncharacterized protein isoform X1
KO
K19026
spatacsin
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svs03400
]
117846948
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
117846948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
WD40_WDHD1_1st
CCD
Motif
Other DBs
NCBI-GeneID:
117846948
NCBI-ProteinID:
XP_034583965
LinkDB
All DBs
Position
3:complement(8468228..8494021)
Genome browser
AA seq
3160 aa
AA seq
DB search
MSPQAQIPRARVHLHRPQPDFSVRALNSFSPPTIRARPTVVGVGRTAGDVADDGPAVLQL
CRWELSETQLKLSKFREAFISPTRRLFGLLSDCGDLVLATAEVNPSQVELPRALSDTCSQ
AVFETFSSIPRVKSLAWGYCSDASSQLEDSGFNEILVVSSDASITVHAFCHPRKSTLTVN
STSDAKELHGEWKEWGPTECSVLEDGESGPKNWFCSFLTTITASVSSGKYQAKFPVKSSL
PHSAEVVSFSLYDITLSFLKFWYSKCSPKTMMETDSESPQSFFSSLPLAEASCSCQWECL
KVLSSSSGYLIGLVLTPNDSVTCEAHPCNTECILIAVLELNQWGIQWNFVADLQDVRDGV
KASPKWVDFQLSDMFLACLNATGFVAIWNVKTGGLATSFSVLQQCRTGLEMPTRSSMPDV
TNLHGGNISVESFAGRMFKRLVLASYSHLLAVVDEVGVVYVFYADDTLNFKANVLENFDL
SVTNHFGDCLSAWEAAGHEIGSLSFSTHQSIRQGSLNPAKLVPEVSWKNDVGIVRPRKRR
KCRCDENEVDSWPSGFVTTGQMKVGPAYPDTLNSSSTLRRILLPPCRSYEDVISLSPLGL
TRIFKGSNADGNEHVKIFHTELLMYSSFLGERDIDVGFMDKRLPFKKDSAFVGDSVVCCC
QGYLYLITQNGLSVVLPPVSISSFSSHGDAIKFWQPGFAVGSACNALNLLSVERSETRWK
PWQIEVLDRALLYEGPALADRLCWENGWDLKVSRLRWLQLALHYSMIADLEQSLDMLAEV
NLAEEGVLQLLLASIHRLSGRSGSDNEVAVSSRLMVLAVRFATRMIKCYGLQKQNTDMPD
NSVKLHEMSSLLMVIRSIQHRVSAKNQNSVRMGDDKNSLKIGTELLQNDSSLSVVVVDGL
SSGLSGGLDAHDRQESAHVLVPDSDSLLALAPAESSLSASNFHDINTNKGTAQDGRQIIQ
GNIKEMINRWEMNNFDLKTVVREALQSGRLPLAVLQLQLLRQRELVSNEDSEDAFSEVHE
IGRSIVYDLLMKGKTELAVATLERLGDDVESDLRQLMQGTVRRSLRLQIADEMKKRGFIR
SSEWKMLETITLIERFYPSSSFWDTYFVRENVIRDAAKIVTLPGEDKPALSLHIRNQPLI
ECGDVDGTVLGSWVNIDDYTDSKESSGSNISDGYWACAAVWSDAWDQRTVDRILLDQPYH
VHAHIPWESQFEYFVGHNDAGKVCELLDMIPNSVLLEGIIRVNVDSLQAADNTVSDLTVP
DYNMYICDSEELEPVCMEIPHVKVFRSLYNHESTSYIRMLIQQELAKKHIFVKEYWKSTT
EIIPLLARAGMLIKVGPRKEYSTTFSASEMPDDANHQGREGALHKLVIRFCVQYNLPYLL
ELYLDNCNLAPEKDCIPLLKDAAGDCKWAQWLLFSRIKGLEYEASFSNARWNLSQKMINS
SNLTAVEIDEMLYTVDDMAERIGEMSALATLMYASAPIQKSICTGSVNRSRGLPSQCTLE
NLGPCLQQFPTLWKTLYSACFGQGEYGCLNYSPANVFGKSSISEYLRWRYSIFSSAGGDT
SLLQMVPCWVPKSIRRLIQLFEQGPFGMQLLSSAPPSEELFTHSVTDYIYNSTGYTDANA
LSLEASIQKSVEEELYSSLEEKDVRVEHHLHRGRALAAFRHLLVKRASQLKSASACQVIP
AQSNVQADVQLILAPLSQAERSILISVAPLAITNFEDSALVASCIFLLELCGLCANMLRL
DIAALRRISSYYKSVQQKKHFDLSSPKAPELHMQSHGADIAPALARALAEDYVQSDHLHV
LEQTQTSMAPKREQTPQPLIAILQHLEKASLPSLDEGKTCGFWLLTGIGDASVYRSQQNE
ASQHWNLVTEFCQAHHLPLSTKYLALLANDNDWVGFLTEAQIAGFPIEVVIEVAAKEIRD
SRLRTHILTVLKNMMSLRRKSSGNIPSGSSDSSFSAVDGNNPVELFGILGVCEKQKNPGE
ALLNKAKQMQWSLLAMIASCFPDVTPLSCLSVWLEITAAREMSSIKVDDISSKIAKNVES
AVVATNKLPGTCRNVEFRYNRKNPKRRRFLEASPEKFTMCFSLDSSCGPNSAATSYPADI
DAHQESGRSISGETIMSVDIDERLACLSSMVAVLCEQQLFLPLLRAFEMFLPSCSLLSFI
RSLQAFSQMRLPEASAHLASFSVRIKDEASHTQLNSSKEVSVLAGWVAATAVKAADAVLS
TCPSIYEKRCLLQLLSGVDFADSGSSSSYFSRRYWKINLSEPDLHKDTDIYDWNDFMDDA
CLLTSLEKDGQWEQARTWARQLESSDIAWESTLDHVTESQAEAMVAEWKEFLWDIPQERA
ALWGHCQSLFMRYSLPPLKAGLFFLKHAEAVGKEIPARELHEILLLSLQWLSGTMTKSSP
VYPLHLLRDIETRVWLLAVESESQSKADGEFATPAVAHNIAVGNGTSIIEQTADVITKID
SNMGSPHMKATERNGIRDNLSCQHVQLFESNSEASSTTINNTRGKRRVKTNLPLRRGVND
NFESRTSDLDNNSNNFQSSKIGEQARNILSEEEFAKMEESLSGWEQNVRPVDMEKAVLSL
LEFGQITAAKQLQQKLSPSYIPEELVLVDVALKIANNSSIGISLSCFDTEALSILQSLGV
ASSSDMIDPLQVMEKLAVKCGEGRGRALIRRIIAVIRTAKLLGLPFSEAFEKQPIEILQL
LSLKAQDSFDEAKFLVETHIMPASSIARILADSFLKGLLAAHRGGYLDSQKEEGPAPLLW
RSSDFLKWAKLCPSEPEIGHALMRLVMTGHEVPHACEVELLILSHHFYMSSSCLDGVDVL
VTFAANRVDSYVLEGDFPCLARLITGVSNFHSLSFILSILVENGQLELLLQKYSATDTAT
GTPASVRGFRMAVITSLKQFNPNDDDALSMVYRHFDMKHEAASLLELRAEQYMNSWLSRY
DKERRNDELLEAMHHLVETAEVLSTIDAGQRTHRACARASLLSLQIRIPDLLWIGLSETN
ARRIFVEQSRFQEALIVAEAYNINQPMEWAPVFWNQMLKPDLIEQFVAEFVSVLPLQPPM
LLELARFYRAEVAARGEQSHFSVWLSPGGLPAEWVKHLGRSFRSLLRRTRDMRLRLQLAA
LATGFVDVLDICNKVLDKVPENAGPLILRKGHGGAYLPLM
NT seq
9483 nt
NT seq
+upstream
nt +downstream
nt
atgtctccacaggcgcaaatcccccgggccagagttcatctccacaggccacagccagac
ttctccgtccgtgctctcaacagcttctctcctccgacgattcgtgctcgtccaactgtg
gtcggtgttggtaggacggccggcgacgtggcagatgatggccctgctgtactacagtta
tgcagatgggaattgtcagaaacccagcttaaattatcaaaatttcgagaggcttttata
tctccgacaaggcgtctttttggactactctcagactgtggagatcttgtcctggcaact
gcggaggtcaatccatcacaagttgaattacctagagctctctcagatacctgtagtcag
gcagtctttgaaacattttcttctattcctagagttaagtctttagcatggggatactgt
tctgatgcttctagtcagcttgaagactcaggttttaatgaaattcttgtcgtatctagt
gatgcttctatcacagttcatgcattctgtcatcctcgcaaaagcacacttacagttaat
tccacatctgatgctaaagagttgcatggggagtggaaagagtggggtcctactgagtgc
tcagtgttggaggatggtgagtcaggtccaaaaaactggttttgttctttcttgactaca
atcactgcatctgtttctagtggaaaataccaagccaaatttcctgtgaaatcttcatta
cctcattcagcagaagtggtatcctttagcttatatgatattactctgtcattcttgaag
ttctggtatagcaaatgttctccaaagactatgatggaaaccgacagtgaatcaccacaa
agtttctttagttctttacccttagctgaagcatcatgcagctgtcagtgggagtgtcta
aaagttttgtctagctcttcaggttatttgatcggcttagttttgactcctaatgactca
gtaacttgtgaggcccatccatgcaacacggagtgtattttgattgctgttcttgagcta
aaccagtggggtatacagtggaactttgtggcagaccttcaggatgtacgtgatggtgtt
aaggccagtccaaaatgggttgattttcagttgtcagatatgtttcttgcctgccttaat
gcaacaggttttgttgccatttggaatgtgaaaactggtggccttgccacatcattcagt
gttcttcaacagtgcagaacaggtctggagatgcccacgaggagctctatgcctgatgtg
acaaatttgcatgggggaaacatctctgttgagagctttgctggtagaatgtttaagcgg
ttagttttggcatcgtattctcatcttcttgctgtcgtagatgaggttggagtagtgtat
gtgttctatgcagatgacaccttaaacttcaaagctaatgtgcttgaaaactttgatctg
agtgttacgaatcattttggtgattgtttgtctgcctgggaagccgctggtcatgagata
gggagtctatcatttagcactcatcagtccatacgacaggggtcacttaatccagccaaa
ttggttcctgaggtctcatggaaaaatgatgttggtattgtcaggcctagaaaaagaagg
aagtgtagatgcgatgaaaatgaagtggacagctggccaagtggttttgtcactacaggg
cagatgaaagttgggcctgcttatcctgacactctgaattcctctagtaccttaaggagg
atacttcttcctccatgcagatcatatgaggatgtaattagtctgtctccgcttggacta
acgaggatttttaaaggttcaaatgcagatggaaatgagcatgtcaaaatttttcatacc
gagttgcttatgtattcatcttttcttggcgaaagagatattgatgttggatttatggac
aaaaggcttccatttaagaaagattctgcttttgtcggagattctgttgtttgctgctgt
cagggatatctgtatctaatcactcagaatggcctttccgtggtccttccaccagtttct
atttcatctttttcgtctcatggtgatgctatcaaattttggcaaccgggttttgctgtt
ggtagtgcatgcaatgctctgaacctattatcagttgaaagatctgaaacaaggtggaaa
ccctggcaaatagaagttttggatagagcattgttgtatgaagggcctgcactagcagat
aggctctgctgggagaatggatgggacttgaaagtctctaggttacgttggctgcaattg
gccctgcattactcgatgattgctgatctagagcagtcacttgatatgctcgctgaggtc
aatcttgcagaagaaggtgtcttgcaactgctattggcatctattcatcggttatctggt
aggtctggaagcgataatgaagtcgcagtgtcatcaaggttaatggttttagctgtccgc
tttgcaacaagaatgataaaatgttatgggcttcagaagcagaacacagacatgccagat
aattcagtaaagcttcatgaaatgtcttcccttttgatggtaataaggagtatccaacac
cgagtctctgcaaagaatcagaattctgttcggatgggagatgataagaactcactgaaa
ataggtacagaattattgcaaaatgattcttcactttcagttgttgtagtggatggtctt
tcatcagggctgtcaggtggtttagatgctcatgacaggcaagagtcagctcatgtgttg
gttcctgatagtgacagcctgttagctctagcgccagctgaatcatctcttagtgcttcg
aatttccatgatattaataccaataaagggactgctcaagatgggagacaaattattcaa
ggaaacatcaaggaaatgattaatagatgggaaatgaataactttgacttgaaaactgta
gtcagagaagcactgcaatctggtcgcctacctttggcagttcttcagctgcagcttttg
cgccagagggaattagtttccaatgaggattcagaagatgctttctccgaagttcatgaa
ataggaagatctattgtatatgatctgttgatgaagggtaaaactgaattggctgtagca
acgctagaaaggttaggagatgatgtagagtcagacctaagacaacttatgcaaggtact
gtcaggaggtcattaaggctgcaaattgctgatgagatgaagaagcgtgggttcataagg
tcaagtgaatggaagatgctagagactataactctgattgagcggttctacccaagcagc
agcttctgggacacatattttgtcagggagaatgtcattcgtgatgctgcaaagattgtt
acactgccaggagaagataaacctgcattatctctccatatccgcaaccaaccccttatt
gaatgcggtgatgttgatggaacagtgcttggttcttgggtgaacattgatgattacact
gattcaaaggaatcctctgggagcaacatttctgatggctactgggcctgcgctgccgta
tggtcggatgcttgggatcagagaactgtggaccgcatattgctggatcagccttatcat
gtacatgctcatatcccatgggaatctcagtttgaatattttgttggtcataatgatgcg
gggaaagtctgtgaacttctggacatgattcccaacagcgtacttttagaagggattatt
agagtaaatgtggacagtttacaagctgccgacaacaccgtttctgacctaacagttcct
gattacaacatgtacatatgtgactcagaagagctggaacctgtttgcatggagatacca
catgttaaggtatttagatccttgtacaatcatgaatcaacgtcgtacatcagaatgcta
atacagcaggagttggcaaagaaacacatctttgtgaaagagtactggaaaagtactact
gaaattatacctttgcttgcccgtgctggcatgcttataaaagttggtccgaggaaggaa
tattctacgacattttctgcgtcagagatgccagatgatgccaatcaccagggtcgtgaa
ggcgcattgcataagttagtcatacgtttctgtgtgcaatataacttgccatacctactg
gagctctatctggacaactgtaacttggctcctgaaaaggattgtatccctttactcaaa
gacgctgcaggtgattgcaagtgggcacaatggttactcttctccaggatcaaaggtctt
gagtatgaggcatcattctctaatgcccgttggaatttgtcacagaaaatgattaatagt
agtaatcttactgctgttgagattgatgaaatgttgtatacagttgatgatatggctgaa
cgaattggtgaaatgtctgcactggctaccttaatgtatgcttcagcaccaattcagaaa
tccatatgtacaggaagtgtgaacagaagtcgtggtttgccatctcagtgcacattagag
aacctgggtccttgtctccagcaatttcccacgctatggaaaaccctttattctgcttgt
tttgggcaaggtgaatatgggtgtttaaactactctcctgccaatgtgtttggaaaatca
tcaatttcagagtacttgcgatggcgctatagcattttttcctctgctggaggagacact
tcgttgttgcaaatggttccatgttgggtcccaaagtctattagacgattaattcaactc
tttgaacagggcccttttggaatgcaactgctatcaagtgctccaccatctgaagagtta
ttcactcacagtgtcactgattatatatacaattccactggatatactgacgccaacgca
ctgtccttagaagcatcgatccaaaaaagtgttgaagaagaattatattcttcccttgag
gagaaagatgtgagagtggaacatcatttgcaccgtggtcgagccctagctgctttcagg
catcttcttgttaagagagcttcgcagttgaaatcagccagtgcatgtcaagtgatacct
gcacagtctaatgttcaagcagatgtacaattgatacttgctcctttaagtcaagctgaa
cgatcaattcttatatcggtggctccactagccattacaaactttgaggactcggctcta
gttgcttcctgtatattcttgttggaactttgtggcctgtgtgccaacatgcttcgttta
gatattgctgcacttcgacgcatctcttcctactacaagtcagttcagcaaaaaaaacat
tttgatctatcttcacctaaggccccagagctccatatgcagtcccatggagctgacata
gctcctgctctagctcgagcattagccgaagattatgtccagtctgatcatctgcatgta
ttggagcagacgcaaacctcgatggctcccaagagggaacagacaccacagcctcttatt
gctattctgcagcaccttgaaaaagcaagtttgccatcattagacgaaggtaaaacctgt
ggattttggcttttgactggcattggtgatgcatcagtttaccgatcccagcagaacgaa
gcaagtcaacattggaatttggttactgaattctgtcaggcacaccatctcccactaagt
acaaaataccttgctttactggccaatgacaatgattgggttggttttttaacggaagct
cagatagctggattcccaattgaagttgttattgaagtggcagccaaagagataagggat
tcaagactaaggactcacatattgactgttttaaaaaatatgatgtcacttagaaggaaa
tcatccggtaatataccttcaggaagtagtgattcatctttctctgctgttgatggcaat
aatcctgtggaacttttcggcattcttggagtctgcgaaaaacaaaagaaccctggggag
gcactcctgaataaagcaaaacaaatgcagtggtcgttgctagccatgattgcttcatgc
tttccagatgtaactcctctctcatgcttaagtgtttggcttgagattacagccgcaagg
gagatgtcctcgatcaaggtggatgatatttcctcgaaaatcgcaaagaatgttgaatct
gctgttgtggccacaaacaaattgccaggcacttgtaggaatgtggaatttcgttacaat
agaaagaatccaaagcgaagacggtttcttgaagcctcaccggaaaagttcacaatgtgt
ttctcgttggatagctcatgtgggccaaattctgctgcaacttcctatcctgcagatatt
gatgctcatcaagaaagtggaaggtcaatctctggagaaactataatgtctgttgatatt
gatgaaaggcttgcatgtttatccagcatggtagcagtgctttgtgaacaacaactgttt
ctaccattgcttagagcttttgaaatgtttctgccttcttgctcccttctttccttcata
cgttctctgcaggcattttctcaaatgcgtctgcccgaggcttctgcacatttggcatca
ttttcagtgagaataaaagatgaagcttctcatactcaactaaactcctctaaggaagtg
tctgttctagcaggatgggtagctgctacagctgttaaagctgcagatgctgtactctca
acttgtccatcaatttatgagaagaggtgtttactgcagcttctttctggtgtggatttt
gctgacagtggctcttcatcatcttactttagccgaagatattggaagattaacctgtcc
gaacctgatttgcataaagacactgatatctacgactggaatgatttcatggatgacgct
tgtcttttaacatcattagaaaaggatggtcaatgggagcaagctcgcacatgggcaaga
caactggagtcgagtgacatagcttgggagtctactcttgaccatgtcactgaatcacag
gcagaagccatggttgctgaatggaaggagtttctttgggatatcccacaagaacgtgca
gccttgtggggtcactgtcaatctctcttcatgagatactctttacctcctttaaaggct
ggattatttttccttaagcatgctgaagcagtaggtaaagagataccagcaagagagctt
catgaaatactactgctatctctacaatggctaagtggaactatgactaaatcctctcca
gtctatcctcttcatcttctacgagatattgagaccagggtttggctcctggctgttgag
tccgagagccagtccaaggctgatggtgaatttgccactcccgctgttgctcacaacata
gctgttggaaacggtaccagtattatagaacagactgctgatgtcatcacaaaaatagac
agcaatatgggttcgccacacatgaaagctacagaaaggaatggcataagggacaattta
tcatgccagcatgtgcaacttttcgagtctaacagtgaagcatcttcaacaacaataaat
aacacaagaggaaagcgaagggtgaaaacaaatttaccacttagacgaggtgtcaatgat
aattttgaaagtagaactagtgatctggataacaattctaacaattttcaaagttcaaag
attggtgaacaagctagaaatatactttctgaagaggaatttgcaaagatggaagaatct
ttatctggttgggaacaaaatgttaggcctgtggatatggagaaggctgtgctttcctta
ctggaatttgggcaaataactgctgctaagcaactccagcaaaagctgtctccatcatat
attcccgaagaacttgtccttgttgatgttgctttaaaaattgccaataacagcagtata
gggatcagtttgtcatgctttgacacggaggctctttcaatacttcaatcactgggagta
gcaagtagcagcgatatgatcgacccgttacaggttatggagaaactagctgtgaaatgt
ggcgagggccgtggacgagctcttattaggagaataatagcagttattcgaactgctaaa
ttattgggactcccattttccgaagcatttgagaaacagccaattgaaattctacagttg
ctttccctgaaagctcaggattcttttgatgaagctaaatttctggtggaaacacacatc
atgcctgcatctagcattgcaagaattctcgctgattcgtttctaaaggggcttttagct
gcacatcgtggaggttatctggattcccaaaaggaagaaggtcctgcaccactattgtgg
agatcaagtgacttcttaaagtgggcaaaattatgtccatcagaaccagaaattggtcat
gctttaatgcgtttggtaatgactggacatgaagtaccgcatgcttgtgaggttgaactc
ctaatattgtcacaccacttctacatgtcatcttcttgtcttgacggagtggatgttctt
gtaacatttgcagcaaatagagtggactcatatgttttagagggggattttccttgttta
gctcgcttaatcactggagtgagcaatttccattccttgagcttcattctttccatcctt
gtagagaatggccaattggagttgctacttcaaaagtattctgccactgacacagctact
gggacgcctgcatcggttcgaggatttaggatggctgttattacatcactgaaacagttt
aatccgaatgacgacgacgctctctcaatggtatacaggcacttcgacatgaagcatgag
gctgcttctctccttgaattgcgtgcagagcaatacatgaacagctggttatcgcgatac
gacaaggagcggagaaatgatgaactccttgaggctatgcatcacctcgtagagacagct
gaggttctttcaacaattgatgccggccaaagaacacatcgtgcttgtgcccgtgcttct
cttctgtcacttcagattcggatacctgatcttctgtggattggtctttctgaaaccaat
gcccggcggatatttgtggaacaatctagattccaggaagcccttattgttgctgaagca
tacaacataaatcagcccatggaatgggctccagtcttttggaaccaaatgctgaaacca
gatctaattgagcaattcgtggctgagtttgtatcagtgctgcccctgcagccgccaatg
cttctagagcttgcaaggttttacagggcggaggttgcagctaggggggagcaatcacac
ttctctgtctggctttcgcccggaggcttgcctgcagagtgggtgaaacatcttggcaga
tcattcagaagcctgctgcgtagaacgagggacatgaggctgaggctgcagttagcagcc
ctggcgacaggcttcgttgatgtccttgatatatgcaataaagttttggacaaagtccca
gagaatgctggcccgctgatcctaaggaagggccatgggggtgcataccttcctcttatg
taa
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integrated database retrieval system
