Setaria viridis (green foxtail): 117846997
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Entry
117846997 CDS
T07951
Name
(RefSeq) RNA polymerase sigma factor sigC isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117846997
Transcription machinery [BR:
svs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
117846997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Motif
Other DBs
NCBI-GeneID:
117846997
NCBI-ProteinID:
XP_034584020
LinkDB
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Position
3:complement(8428230..8431260)
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AA seq
566 aa
AA seq
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MGLQMMHGRPCASSSSSSSSWSWMVQVQPPKQSHHPLSGGRSISSGSLAALALHLLLKRR
KYHGRDIATAFASSSSVLQITESKSSSLTKPKAERKVLDDALGRNVQNDWMDEETLFWMD
RNYTDRDLQYGLLMQNLHELETSLAYKDLKMLEKGILVRIEQLGALRSFDASMSRTTLDT
LPQTSHEQDCSLLDKIIEFDPETPLKEEQDTEVIVRSGKSQERKLKRMRASEKGSRISVK
VNQRRSKKSRKSSSSQFISEWKNYPVRRRTIIREQSSLLVTIKECANLEKIRENMVKDGQ
EVSYQRWAEAAGVDEAELKSRLQAGYCCRERLIVTTEWLVRYIARTYTGMGTAFDDLLQA
GKMGVLDGAEKFDSRKGCKFSTYVKYWIRKGMLALLAENSGVTILPARMESIIRKVKEAR
RAIRYSQGRNPSDSEIAAMVGVSVANVRLARKCSRRVVSLYSEVGIGQNAKFTEVIPDAS
LEAADEAMFREQLRERLLVVLDRLPAREGHVLKLRHGLEDGRCMSLEQIGRIYRVSKEWI
RKIEKSAMAKLRNQDVRRDLDDFCRF
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgggtctgcagatgatgcatggcaggccctgcgcatcgtcctcgtcgtcttcctcctcg
tggtcgtggatggtgcaggtccagcccccaaagcagtctcaccatccattgagtggagga
aggtcgatttcttctggatcccttgcggcactggccttgcatctcttgctaaaacgccgc
aaataccatggccgggacattgcgaccgcttttgcatcttcatccagtgtgcttcagatc
acagagagcaagtcaagcagcttgacaaaacccaaggcagaaaggaaggtccttgacgac
gctcttggcagaaatgtacagaatgactggatggatgaagagacgttattctggatggat
aggaattacacagacagagatctgcagtatgggttgttaatgcaaaaccttcatgaattg
gagactagtttggcttataaagacttgaaaatgctggaaaagggtatccttgtacgtatc
gaacagcttggagctctgcgatcgtttgatgcgtctatgtccaggaccaccctggacacc
ctaccacagacctcacatgaacaagattgttctctgctcgacaaaatcatcgagttcgat
ccagagactcctctgaaggaggagcaagatactgaagtaatcgttcggagtggcaagagt
caagagaggaagctgaaacgaatgagagcatcagaaaagggctccaggatctctgtgaag
gtgaatcaaagaagatcgaagaaatcgcgaaagtctagtagcagccagtttatatccgag
tggaaaaattatccggtccggagaaggaccattatacgcgaacaatcatccttgctagtg
accatcaaggaatgtgcaaaccttgagaagatcagagagaacatggtgaaggatgggcag
gaggtgagctaccagaggtgggcagaggcagctggagttgatgaggcagagctgaagagc
aggctgcaggcaggttactgctgccgagagaggctgatagtgaccaccgagtggctggtc
aggtacattgcaagaacatacaccggaatggggacggctttcgacgatctacttcaggct
gggaaaatgggggtcctcgatggagcggagaagttcgacagccggaaggggtgcaagttc
tccacgtacgtcaagtactggatcaggaaagggatgctagctctcctggccgagaattca
ggagtcaccatcctgcccgcaagaatggagagcatcatccgcaaggtgaaggaggcgcgg
cgcgcgatccggtacagccaagggaggaacccatcggattcagagatcgccgccatggtc
ggcgtgtcggtggccaacgtcaggctggcgcgcaagtgctctcgcagggtcgtgtcactc
tactcggaggtcggcatcggccagaacgcaaagttcacggaggtgatcccggacgcgtct
ctggaggccgccgacgaggccatgttccgggagcagctgagggagaggctgctggtggtg
ctggacagactgccggcgcgggaagggcacgtgctgaagctgcggcacgggctggaggac
ggcaggtgcatgtcgctggagcagatcggccgcatctaccgcgtctccaaggagtggatc
aggaagatcgagaagtccgccatggccaagctcaggaaccaggacgtgcgccgcgacctc
gacgacttctgcaggttctaa
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