Setaria viridis (green foxtail): 117847031
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Entry
117847031 CDS
T07951
Name
(RefSeq) high mobility group B protein 6
KO
K09273
upstream-binding transcription factor
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
svs03000
]
117847031
03021 Transcription machinery [BR:
svs03021
]
117847031
Transcription factors [BR:
svs03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
UBF
117847031
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
UBF
117847031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
CHDNT
KRAB
Motif
Other DBs
NCBI-GeneID:
117847031
NCBI-ProteinID:
XP_034584063
LinkDB
All DBs
Position
1:1028722..1031089
Genome browser
AA seq
488 aa
AA seq
DB search
MATAAAGSKRGGGRGRKALVAVLDNDANISAGKAAKAGDLSASSAPKAKRAPARSGKAAK
AAAAAASVVDDVAELQGMLERLRLEKEKAEEMVRERDEVIRKKEEEIETKEKEQERLQAE
LRKVQRAKEFKPTVSFPLVKSLLEKEQDAGDKGKRKKGKGKAVPERKKPCTAYVLWLKDQ
WAEIKKENPEADFKEVTNTLGAKWKALGAEEKQPYEERYRQEKEAYLQVVGQEKREAEAM
KLLEEQQMQWTAKELLEQYLKFRQEAEEGDGKKGKRKNSKKVKDPAKPKQPMSAYFVYTQ
ERRAALVAEKKNVPEIGKITGEEWKNMTEAQKAPYEEVAKKQKEEYHKQMGVYKKKKIEE
AASLEKEEEEQKKIMKQEALQLLKKKEKADNIIKKTKEKRQKKKQENVDPSRPKKPASSF
LLFSKEARKQLLEERPGINNSTLNALISVKWKELSGEERQAWNDKAAPAMAAYKKEMEEY
TKAHSSSA
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgccgcggcagggagcaagaggggcggcggccggggccgcaaggcgctcgtg
gccgtgctcgacaacgacgccaacatctccgccggcaaggccgccaaggccggggacctc
tcggcctcctccgcgccgaaggcgaagcgggcgcccgccaggagcggcaaggccgccaag
gccgcggcggctgcggcctccgtagtggacgacgtggcggagctccaggggatgctggag
cggctgcggctggagaaggagaaagcggaggagatggtgagggagcgggacgaggtcatc
cggaagaaggaggaggagatcgagaccaaggagaaggagcaggagcgcctccaggccgag
ctcaggaaggtgcagcgcgccaaggagttcaagcccaccgtgagctttcctctcgtcaag
tcgctgcttgagaaggagcaggacgcaggcgacaagggcaagaggaagaaggggaagggc
aaggccgtcccggagaggaagaagccctgcacggcgtacgtgctctggttgaaggaccag
tgggccgagatcaagaaggagaaccctgaggccgacttcaaggaggtgaccaacacgctg
ggcgccaagtggaaggcgctgggcgccgaggagaagcagccctacgaggagcggtaccgg
caggagaaggaggcctacctccaggtggtcggccaggagaagcgcgaggctgaggccatg
aagctgcttgaggagcagcagatgcagtggaccgccaaggagctgctggagcagtacctc
aagttcaggcaggaggccgaggagggcgacggcaagaaggggaagaggaagaacagcaag
aaggtcaaggaccccgccaagcccaagcagcccatgtcggcctacttcgtgtacacgcag
gagaggcgcgccgcactggtcgctgagaagaagaacgttcctgagattggcaagatcact
ggggaggagtggaagaacatgacagaagcccagaaggctccctacgaggaagttgcgaag
aagcagaaggaggagtaccacaagcagatgggggtttacaagaagaagaagatcgaggaa
gctgcgagcctggagaaagaagaggaggagcagaagaaaatcatgaagcaagaggctctc
cagctgcttaagaaaaaggagaaggcagacaacatcatcaagaaaaccaaagaaaagcgc
cagaagaagaagcaggagaatgtagatcccagcaggcccaagaagcctgcctcttccttc
ctcctcttcagcaaggaagcgaggaagcagctactcgaggagcgcccgggcatcaacaac
tcgaccctgaatgcacttatctcggtgaagtggaaggagctgagcggtgaggagcggcag
gcgtggaatgataaggccgcacctgccatggcggcatacaagaaggagatggaggagtac
accaaggctcacagctcgtccgcttga
DBGET
integrated database retrieval system