KEGG   Setaria viridis (green foxtail): 117847264
Entry
117847264         CDS       T07951                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
svs  Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:svs00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:svs04812]
    117847264
Cytoskeleton proteins [BR:svs04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     117847264
SSDB
Motif
Pfam: WD40 Katanin_con80 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_EIPR1 NBCH_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_IFT140_1st eIF2A Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_VPS8 Beta-prop_RIG_1st Beta-prop_DCAF12 PAN2_N
Other DBs
NCBI-GeneID: 117847264
NCBI-ProteinID: XP_034584330
LinkDB
Position
3:920491..928894
AA seq 921 aa
MTTNTKRAYKLQEFVAHSSNVNCLKIGRKTSRVLVTGGEDHKVNLWAIGKPNSILSLSGH
TSAVESVGFDSTEVFVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCMSVDFHPFGEFFAS
GSLDTNLKIWDIRRKNCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL
HEFKCHEGQIQCIDFHPHEFLLATGSADKTVKFWDLETFELIGSTGPETTGVRSMTFNPD
GRSLLCGLHESLKVFSWEPIRCHDTVDVGWSRLADLNVHEGKLLGCSFNQSCVGIWVVDL
TRLEPYATGTSTKLNGHSELKTVSSGTMPLQNDSGSKANIGRSSLLQNSENNLKASSGRL
SVSQNSDSALKETKSTASSGLVPSTPQRAGVGSNNRSFGNSAFASGGTTLKRSSLRSHNA
SSVSNFSKSDVVPVIVPRTSSGGELATDSRSDAADVAPVLSKATRRVDPATDSRKESTDV
EPVVPKASSRMEISSDSAPVVISKSSRRLESGADSKKESADAASVVVPRENTKMEMASDS
APVLSKASRKVDPGTDSKKESADAAPVIPRASSRTEMASDARREPSAGRISPFRIQSRYA
ELRKLTHAKVDANKVDSRSKNTETDDFNCQIFFPRRNGVFQTMSSEETREDIKHGAVDRM
AFSNPAELNASVRGENYVSRMRKPRDNCYVEVSRAGRARSSVSNWEGRDQSPSHEEPTTS
SSSLAPTGRSYSSRGSNQASETPTIASDEDVLSLLMEQHELFLSSTRSRLTKLQIIHQMW
VRNDIRGVLSAMEKMCDHAVSADMASVLMEKSETITLDLCTSILPVVTDLLESKTDRHLG
VSLELLVKLVRTFGPMIHSTVSAGPSSVGVDLEAEQRRERCNLCFIELEKVKNKLPFLTR
RKGAVANAAQELTLVFQEVMS
NT seq 2766 nt   +upstreamnt  +downstreamnt
atgaccaccaacaccaagcgcgcctacaagctccaggagtttgtggcgcactcgtccaat
gttaactgcctcaagattgggaggaagacctcacgggttcttgtcacaggaggagaggat
cataaggtcaatctttgggctattggaaagcccaattcaatattgagtttatctgggcat
acaagtgctgtggagtccgttggttttgattccacagaagtttttgtggctgcaggagca
gccagtggaacaattaaattatgggatttggaggaggcgaagattgtccgcactcttacc
ggacataggtcaaattgtatgtcagttgatttccatccctttggggaattctttgcctcg
gggtcattggacactaatctgaagatatgggatataagaaggaagaattgcatccataca
tacaaaggtcacacacgaggggtgaatgctattcgattcacacctgatgggcggtgggtt
gtgtctggtggtgaagataatacagtaaagctctgggatctgacagctggaaagttatta
catgaattcaagtgccatgagggtcagattcagtgcatagatttccatcctcatgagttc
cttctggcaacaggttcagctgataaaactgtcaagttctgggatttggagacttttgag
ttgattggatctactggacctgagacaacaggtgttcgatccatgacattcaatcctgac
ggaagatccctgttatgtgggttgcacgaaagcttaaaggttttctcttgggagccaata
agatgccatgatactgtggatgtgggatggtctagacttgctgatttgaatgttcacgag
ggaaaacttcttggttgttctttcaatcaaagttgtgttggaatatgggttgttgatctg
acgcgtcttgagccatatgcaaccggtacatcaactaaactaaatggtcattccgaattg
aagactgtgtcaagcggcactatgcctttacaaaatgacagtggttcaaaggcaaacatt
gggcgatcatcacttttgcaaaattcagagaataacctaaaagcttcttcaggaagactg
tcggtttctcaaaactcagattctgcactaaaagaaacaaaatcgacagcctcaagcgga
ttggtcccaagcacaccacaacgggctggagttggctccaataatagatcttttggaaat
tcagcctttgcatctggtggtaccaccttgaagagaagttcgttgaggagtcacaatgcc
tctagtgttagcaatttcagtaaatctgatgtagtgcctgtgattgttccaagaactagc
tcaggaggggagctagctactgattctagaagtgatgctgctgatgtggcacctgttctt
tctaaggcaaccagaagggttgatcctgctactgattctagaaaggaaagtactgatgtg
gaacctgttgttcctaaagcaagctcaagaatggaaatatcctctgattcagcacctgtt
gttatttccaagtcaagcagaaggctggagtctggtgctgattccaaaaaggaaagcgcc
gatgcagcatctgttgttgttcccagggaaaatacaaaaatggaaatggcctctgattct
gcacctgttctttcaaaggcaagcagaaaggtagatcctggtaccgattcaaagaaagaa
agtgctgatgcggcacctgtcatccccagggcaagttcaagaacggaaatggcctctgat
gctaggagagaaccttctgctggaagaatatcgccattcagaatccagtcaagatatgct
gagctacgcaagttaacccatgcaaaagttgatgcaaacaaagttgatagcagaagtaaa
aatactgaaacagatgacttcaattgccaaatatttttcccccggagaaatggtgttttt
caaacaatgagttctgaagaaactcgtgaagatataaagcatggtgcagttgacaggatg
gcattttcgaatccagcagagttgaatgcaagtgtccgcggtgagaattatgtttctaga
atgcgtaaaccaagagataactgctatgttgaagtttcaagagcaggaagagcaaggtca
agtgtctctaattgggaagggagggatcaatcccctagtcacgaagaaccaacaacgagc
agttcttcgctggctcctacaggccgttcatattcatctagaggaagcaatcaagcttct
gaaactccaaccatagctagcgatgaggatgttctatcccttctaatggagcaacatgag
ctatttctaagctcaacacggtctcgcctaacaaaattgcagattattcatcaaatgtgg
gtaagaaacgacatcagaggtgttctctctgcgatggagaagatgtgtgatcatgctgta
tctgctgatatggcaagcgttctgatggagaaaagtgaaacaatcacactagatttatgt
acctccatcctgcctgttgtcactgaccttctggagagtaaaactgacagacacttaggc
gtttcattggaattgttggtgaagcttgtcaggacctttggtccaatgatacattcaaca
gtatcagcaggtccttcttctgttggtgtagatcttgaggcagagcaaaggcgggagcgc
tgcaacttatgcttcattgaattggagaaagtaaaaaataagcttccttttcttacaaga
agaaaaggggcagttgcaaacgcagcacaggagctcactcttgtcttccaggaagttatg
agttga

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