Setaria viridis (green foxtail): 117847265
Help
Entry
117847265 CDS
T07951
Name
(RefSeq) uncharacterized protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117847265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117847265
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117847265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Vps36-NZF-N
G-alpha
AAA_29
zf-Sec23_Sec24
Motif
Other DBs
NCBI-GeneID:
117847265
NCBI-ProteinID:
XP_034584332
LinkDB
All DBs
Position
3:911335..916361
Genome browser
AA seq
687 aa
AA seq
DB search
MFVPMLDNRSDLEKPSINPGMWQCSICTHENDTSNLSCELCGVLRDVSLYFNNISEAEAG
AKRRNKYSGVSVLARSLFAPSSTKPEAIIFSDGSQDNRNATGNKQATMDALHKTYMPSKK
RHINIVPFKFDTPSPDDMVTTGLKSSRNFRKVDTEVLIKDSVDVAGEKTMDSGILVTEKD
TSMDPSASAELDELGGTSSSVPSSSQNITLVLDHELQHLSLESKPKSSKPKIKKPASISQ
YKPEPWMLQSEDQEMRRQLNLAIVGHVDSGKSTLCGRLLHALGLISKKQMHKYEKEAKEK
GKGSFAYAWAMDDSTDERERGITMTVAVKYFDTEKYHVVLLDSPGHKDFVPNMISGATQA
DAAVLVVDASIGSFEAGMGVNGIGQTKEHSQLIRSFGVENLIVAVNKMDQVEYSKDRFNF
VKSQLGIFLRSCGFKDSSVTWVPLSAMANENLVTAASDSRLLSWYNGNCMLKSIDSLPPP
HHDVSRPLRLPICDVIASITLGQVAVCGKVEAGGIRTGSKVLVMPSGDLATVKTIERDSS
RCSSARAGDNIAVGLQGIDTSHLVSGGVICHPDFPVRVASRLELKILVLEITTPILVGLQ
FELHIHHARVSASLVKIPSLLDQKTGKASKKMPRLLTAKQAAIVEVKLDKEVCVEEFSTL
KALGRVFLRSRGNTVAVGVVTRILDQA
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcccatgttagataacaggtctgatcttgagaagccctctataaatcctggg
atgtggcaatgctccatttgcacgcatgaaaatgatacaagtaatttatcctgtgagcta
tgcggtgtacttcgtgatgtgtcactgtatttcaataatatcagtgaagctgaagctgga
gctaaacgcagaaacaagtattctggagtgtccgtattggcaagatctctttttgcacca
tctagtacgaagccagaggctattattttctctgatggctcccaagacaatagaaatgca
acagggaataagcaagctaccatggatgctctgcacaagacatacatgcccagcaaaaag
cgccacattaacatagtgcctttcaagtttgacacgccatctcctgatgacatggtcact
acgggcttaaaatcatcaagaaattttagaaaagttgacacagaggttttaattaaagat
tcagttgatgtcgctggagagaagacgatggatagtggtattcttgtaactgaaaaggat
acaagtatggacccaagtgcatcagcagagttggatgaacttggcggaactagtagcagt
gttccttccagtagtcaaaatataactcttgttttggaccatgagctacagcatttaagt
ttggagagcaagccgaagagcagtaaacccaagattaagaaaccggcttctatttcacag
tataagccagaaccatggatgctccagagtgaagatcaagaaatgcgtagacagctaaat
cttgccattgttggtcatgtcgattctgggaaatcaactttgtgtggtcgattactgcat
gctcttggattgatttcaaaaaagcagatgcataaatatgagaaagaagctaaagaaaag
gggaaaggatcatttgcatatgcttgggccatggatgacagcactgatgagagggagcgt
ggaattacaatgactgtggctgtaaaatactttgacactgagaaataccatgtagttttg
ctcgactcccctggtcataaagactttgttcctaatatgatatctggtgctacacaagct
gatgcagccgtcctagttgttgatgcgtctataggctcatttgaagcaggcatgggtgtt
aatgggattggtcaaacaaaggagcactcgcaacttattaggagctttggagttgagaac
ttgattgttgctgttaataagatggatcaggtggaatattcaaaggaccggtttaatttt
gttaaatcgcaacttggtatctttcttcgatcatgtgggttcaaagactcttcagtcacc
tgggttcctctgagtgcaatggcaaacgaaaacttagtgactgctgcttcagattctcgt
cttttgtcatggtacaatggaaattgtatgctgaaatccattgactcgctacctcctcct
catcatgatgtttcaaggccactacgccttcccatctgtgatgttattgcatctatcaca
ctggggcaggtggcagtttgcggtaaagtcgaggctggaggaatccgaactggttctaag
gttcttgtcatgccttccggagatttagctacagttaaaaccatcgagcgggattcctct
cgttgcagctcagcaagagctggggacaacattgctgttggtttgcaagggatcgacacc
agtcaccttgtgtcaggtggagttatttgccatccagatttccccgtgcgcgtcgcttct
cgcttggagctgaaaatcttggttctagaaatcactacaccaatactggtcggccttcag
ttcgagctgcacatacatcatgcgagggtgtctgcgagcctggttaaaataccgtcattg
ctggaccagaagaccggcaaggcctcaaagaaaatgccacgtctgctcactgcgaagcag
gctgctatagttgaagtgaagctggacaaggaagtgtgcgtggaagaattctcgactctg
aaggcgcttgggcgggtgttcctgcggtctcgaggcaacaccgttgcggtgggcgttgtg
actcgaattctggatcaggcttag
DBGET
integrated database retrieval system
