Setaria viridis (green foxtail): 117847281
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Entry
117847281 CDS
T07951
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117847281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117847281
Enzymes [BR:
svs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
117847281
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
HECT type E3
117847281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
Motif
Other DBs
NCBI-GeneID:
117847281
NCBI-ProteinID:
XP_072148636
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All DBs
Position
3:2877176..2883028
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AA seq
1267 aa
AA seq
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MASLILAVPASSGSHIFRMPRAVPKPGSGSRCAAVLRLLFDEQAGKAQRVYLCGFLWFCI
VSSVRVCPMLTNCLWKCLQKVALQIISNIFSDYDEEYVSTAMEAVPSLCNLLQSSDKTIL
KSAISCLALVAAGASENAEHMGKLSETNAVEATMSLMGNEGWKSLSDDTLTGILGLLKNL
ASVSAKAVKSLFELDFCGLLKQMITYYSSSNCDNDKVKMLLELIYQLMPPLGASEQHAKL
VTAKKNVIMGQSAYMNQLASIVALTVQVAKCAALSSICYRCVVVISNIVELSTPDFLMEL
QKTVNLSSFLTCLLARKNRHILFQTLKISRTLLEKCQQFFLETFTKEGVKHSIDSIVSQE
KNSSHQLKTKNNKESCLCFDLESSSTGEACRIENNAVMKLGEEIKKRFFSVQGSKKSPHR
FGFSLKSVRDFFARLHAATSPTENPDSCKQLSDLSRRLLSDELPVTSTFEFVQSGSIKYL
AIYLSNGAYCNTDLSDGQDVLGQLDEVQSRLQKFASLALTVSNESSANPLGILVEKLLDT
LQMCYDSFPVMLSDEPSTRESMMIPLRYPETQEVTTLELKFRRSQREKELRNYNDVLSVD
LFSTPDAIEPVLLPEVCKKTDQEPAPKNLNQEKEANGSSKLDDGNRSSKLRFLYNGVILQ
PSATFFESILRLMNKGQSDLEIDPSFWDEEHYITYRKRNKSKEISSQSSYNTQLSHVQEN
LQYTWLKDPFFTAILLGKLPGDLDGSDPSYNLLFMLKVLEGLNRFSYQLLMDEQINKFAE
GTLQDINDLKVAIYPVPQHQFISSLLTNKLELQMQDSLFEDGLIPSWCVYLVETCPFLLS
FNTRWKYFCLTAHRLFKTDQANSSTSDHFHGHADQVKSPPQTKKYRVTRSAIIEGAVSMM
TNHGPSSRIIEVEFEGEVGTGRGPTFEFYTTVSHELQRAGLGMWRGDNREDGFIHASFGL
FPKPWSSSSMQGIDFSNVLQKFKLLGHLVVRAVLDGRILDIPLSKAFYKIVLEQELDIYD
IPSFDPELGKTLIEFQALVKRKKFMETSLRTSSPTAVLSYKNVKLEDLCLDFTLPGSPEY
ELIPRGSQKMVTLDSLEEYVSLVVDATLKSGIAKQIEAFKSGINEVFTLKALKMFTEEEM
ERILCGEQDAWALKNLEDHMEFEHGYDISSPSITTFLEILRELGREEQRAFIQFTTGAAQ
LPLGGLASLDPKLTVVRKQCDGNVDDELPSVNTCRHFIKLPPYSSKEIMKKKLKYAITEG
LGSFHLS
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggcatcccttattttggcagtgcctgcgagctctggaagtcatatctttagaatgccc
cgagcagtgcctaagccggggagtggcagccgctgtgctgcagttcttcgacttcttttc
gacgaacaagcaggcaaggcacaaagagtgtacctttgcggcttcctctggttctgcatt
gttagttctgtccgtgtatgtcccatgctcaccaactgtttgtggaaatgcctacagaaa
gtggctctccagatcatctcgaatatcttcagtgattatgatgaagagtatgtgtctaca
gccatggaggctgtgccttctctgtgcaacctcctgcagtcttctgataagacgattctg
aaatccgctatttcttgcttggcattggttgctgctggcgcttccgaaaatgctgaacac
atgggtaagctcagcgaaacgaatgctgttgaggcaacaatgagcttgatgggtaacgag
ggttggaagagcctcagtgatgacaccttaactggcattcttgggctgcttaaaaatctt
gcctctgtctccgcaaaggccgtgaagtctcttttcgagttggatttttgtggattgctc
aagcagatgataacttactacagttcctcgaactgtgataacgataaggtgaagatgctt
ctggagctcatttaccagcttatgccgcctcttggagcatctgagcaacatgctaaacta
gtcactgcaaagaagaatgtcatcatgggacaaagtgcatacatgaaccagcttgccagc
attgttgccctcacagtacaggttgcaaaatgtgctgcactatcatcaatttgctacaga
tgtgttgttgtaatcagcaacattgttgaattaagcacgcctgatttccttatggagtta
cagaagactgtaaatctgtcaagctttcttacttgtttgttggcccggaaaaatcgccat
atcttattccaaacactcaagatttcaaggaccctcctggaaaaatgccaacagtttttc
ctcgagacctttaccaaggagggtgtaaagcattcgattgattccatagtatcacaagaa
aaaaactctagtcaccagttgaaaacaaagaataacaaagaaagttgcctttgctttgac
ctggagtcttcctcgactggtgaggcatgtaggattgagaacaatgctgtcatgaaacta
ggagaagagataaagaaacgcttcttctcggtgcaaggaagtaaaaaatctccacatagg
tttggattttctcttaaaagtgtcagggacttttttgctaggttgcatgctgcaacatcc
ccaactgaaaatccagatagctgcaagcaattatctgatctttcaaggagattattgtca
gatgaactgccagttacttctacttttgagtttgtacagagtggatcgataaaatatctg
gcaatttatctctcaaatggggcatactgcaatacggatctcagtgatggacaggatgta
ctaggacagcttgatgaggtgcagagtcggctgcagaaatttgcttctttggctctcact
gtctccaatgaaagctcagcaaatccccttgggattttggtggagaagctactagacacc
ttgcagatgtgctatgacagttttcccgtaatgctctctgatgaaccgagtacacgtgag
agcatgatgattcccctgagataccctgagacccaggaagtaacgacattggaattaaaa
tttcggaggtcacagagggagaaggaattgcgcaactacaatgatgttctcagtgttgat
cttttctcaacacctgatgccatcgaaccagttctactccctgaagtttgtaaaaaaacc
gatcaggaacctgcacccaagaacttgaatcaggagaaggaagcaaatggtagcagcaaa
ttagatgacgggaacagatcctcaaaactgagattcttgtacaatggtgtgatactccaa
ccatctgctactttttttgagtctatccttcgtctgatgaacaaggggcaatctgatctc
gagattgacccatctttctgggatgaagaacactatataacctataggaagagaaacaaa
agcaaagaaatctcttctcagagttcctataatactcagctatcccacgtgcaagaaaac
cttcagtacacatggttaaaggacccgtttttcactgccatacttcttggcaaacttcct
ggtgatctggatgggtccgatccatcgtacaatctcttgttcatgctgaaagttcttgaa
gggctgaaccgtttttcatatcaactgttgatggatgaacagataaacaaatttgctgaa
ggaactctacaagatatcaatgatcttaaggtggcaatttatccagtcccacagcatcag
ttcatcagcagccttttgacgaataagctagagctgcaaatgcaagatagcttgtttgag
gatggtctcataccctcgtggtgtgtctatcttgttgagacctgcccgttcctattgtcc
ttcaacacacggtggaagtacttttgcctgactgcacatcgcttgttcaagactgaccag
gctaacagttctacttcagaccattttcatggtcacgcagaccaggttaagagtcctcca
cagactaaaaagtatagagtgacccgaagcgcaatcattgaaggcgctgtatcaatgatg
accaatcatggtccaagcagcagaattattgaggtagaattcgaaggagaggttgggact
gggcgaggtccaacattcgaattctacactacagttagccatgaacttcaaagagccggg
cttggaatgtggagaggagacaaccgtgaagatggattcattcatgcctcttttggacta
tttccaaagccgtggtcatcatcaagcatgcaagggattgatttttctaatgtgctacag
aaattcaagcttcttgggcatcttgttgtgagagcagtcctggatggaaggatcctggac
attccactttctaaagcattttacaagatcgtgcttgagcaggagctcgatatatatgac
atcccatcgtttgatcctgagctgggcaagacattaatagagtttcaagcacttgttaag
cggaagaaatttatggaaacatctttaagaacatctagccctactgctgttttgtcctac
aaaaacgtgaaattggaggatttgtgccttgacttcactcttcctggaagtcctgaatat
gaacttattcctagaggctcccagaagatggtgacacttgacagtttagaggaatatgtg
tcattggttgttgatgcaacactgaagagcgggattgccaagcagatagaggctttcaaa
tctggaattaacgaggtttttacccttaaggccctcaaaatgtttactgaagaggaaatg
gaacgcatactatgtggtgaacaggatgcttgggctttaaagaaccttgaggatcacatg
gagtttgagcatggctatgacattagcagtccatcgattactactttcctggagatattg
cgggagcttggaagagaggagcagcgggctttcatacaattcactactggagcagctcaa
ctcccacttggcggtctagcttcacttgatcccaagctcactgtcgtgcgcaagcaatgt
gatggcaatgtagatgacgaattgccaagtgtcaatacctgccggcactttatcaagctc
cctccttactcgtccaaggagataatgaaaaagaaactcaaatatgcaattacagagggt
ttaggctccttccacttgtcatga
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