Setaria viridis (green foxtail): 117848098
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Entry
117848098 CDS
T07951
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117848098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117848098
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117848098
mRNA degradation factors
5'-3' decay
Decapping complex
117848098
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
117848098
NCBI-ProteinID:
XP_034585302
LinkDB
All DBs
Position
3:13411848..13417699
Genome browser
AA seq
813 aa
AA seq
DB search
MRGVRADGGGGGGGGAAASSSSTAENSRFDAAQYSFFGKAPMEGPELGGFLEDGGVDGDG
SGFGGHDDGGYQFSSMGEEIDCMSNLSEIDDLASTFAKLNRSISGTRNPGVIGDRRSISR
ESSLTTDWVQDADFHSWVDQGMLDGDEFLDSKQWCSQLQSSPHFGESKPLSRTSSYPDQP
LQHRSSEPILLHRSTSFTSYPPPGGSAELPYPAQGLTRHASIPSPGAGHHMGSPSSSLSG
SPYHMSGLSHGLPYGRSTSYTAADPSTNSLMQNEWPNQAGPLAFDHLNRRPSLLQPQLSL
PSSSMSSLLYSQQHQRLPPVQPSFQNYLNLHPHLFYHHQSPEIMGNFDHIPNVPSPRDKR
SRSGRGKRSIRLPQQPSDASSQHSESVGIKFRSKYMSSEEIENILKMQHSASHSNDPYID
DYYHQACKAKRSVNTQKSNFCPMSIKDFPSKARSGGDQHSYLQVDANGGVSFSAIRRPRP
LLEVDLPGSGDGLYDHKSSTRPLEKEPMVAARITVEDSLRLLLDVDDIDRFLQSSQPQDN
SFQLRRRRQVLLEGLAASLQLVDPFGPNKPGHSSGLAPKDDLIFLRIVSLPKGRKLLARY
LRLLVPGSELTRIVCMTVFRHLRSLFGGLPTDSGAAETTIGLAKTVSSCVHHMELSALSA
CLAAVVCSSQQPPLRPLGSSAGDGASLIIKSVLDRATDLLADPHSAANYSRSTRSLWQAS
FDAFFGLLTKYCDSKYESIVHRFAMHGSNSLGGPEATKAVSREMPVELLRASLPHTNEQH
RQTLLDFARKSTHVSGFSPNASRGHINSESVPG
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgaggggcgtcagggctgatggcggcggcggaggaggcggaggcgccgccgcgtcatcg
tcttccaccgcagagaactcgcgcttcgatgcggcgcagtactccttcttcggcaaggcg
cccatggaggggccggagctcggcgggttcttggaggatggaggcgtcgacggcgatggt
agcggatttggtggacatgatgatgggggctaccagttctcttctatgggggaagagatt
gattgtatgagtaacttgtctgaaattgatgatctcgcaagcacttttgcaaagttgaac
cgaagtattagcggaacaaggaatcctggcgttattggtgataggcgatcaatttctaga
gaaagttctttgactactgactgggttcaagatgcagacttccacagttgggtagaccag
ggtatgctagatggtgatgaatttctggacagcaaacagtggtgctcacagctgcagtct
tcacctcactttggagagtccaaaccactgtctcgcacgtcttcgtatcccgatcaacca
ctacagcaccgctcaagtgaacctattcttctacacagatctacttcatttacatcatat
ccaccaccaggtggcagcgctgagttgccttatcctgctcaaggtcttacacggcacgcg
agcattccatcacctggtgctggtcaccacatgggttctccaagttcgtcactttctggt
tctccatatcatatgtctggcttatctcatggactgccttatggacgaagcacatcttac
accgctgcagatccatcaacaaacagcctcatgcaaaatgagtggccaaaccaagctggc
ccactcgcttttgatcaccttaaccggcggcccagtttattgcaaccacaattatctctt
ccaagtagttcaatgtcttcattgctttattctcagcagcatcagagattaccaccagtc
cagccatcttttcagaattacctaaacttgcatcctcacctattctatcaccatcaatct
cctgagataatgggcaattttgatcatattcctaatgtgccttcacccagagacaaaaga
tcaaggtcaggaagaggaaagcgcagcatacgtttacctcaacagccttctgatgcaagt
agccagcatagtgagagtgtggggataaagttcagatccaagtacatgtcatctgaagag
attgaaaacatcttaaaaatgcagcactctgcaagtcacagcaatgatccttacatcgat
gactactaccaccaagcttgtaaagccaaaagatctgtaaatactcagaagtccaatttc
tgccccatgtcaataaaggacttcccctcaaaggcccgctctggtggtgatcagcattca
tatctacaggttgatgctaatggaggagtttcattctctgccatacgcagacctcgtcct
cttcttgaagttgatttgcctggatctggtgatggtttgtatgatcataagtcatccacg
aggccactggagaaagaaccaatggttgcagctagaataactgttgaagattctcttcgt
cttcttctcgatgttgatgatattgatcgattcttacagtctagccagccccaggacaac
agtttccaactgaggcgaaggcgacaggtcctccttgaaggcttagctgcatcccttcag
cttgttgacccttttggccccaacaaacctggccactcatctggattagcccccaaggac
gacctaatttttcttcgcattgtttctctccccaaaggacgtaagcttttggcgcgctat
cttcgacttcttgtccctggaagtgagctgacccggatagtttgtatgacggtcttccga
caccttaggagcttgtttgggggtttgccgacggactctggtgctgcagaaacaaccatt
ggtcttgccaagactgtttcctcttgtgtgcaccatatggaactaagtgctctcagtgcc
tgccttgctgctgttgtctgttcatcgcagcagccgcctctcagaccattgggtagctct
gctggtgatggggcttctctgatcatcaaatctgtactggatagagcaactgatctactg
gcagatcctcattctgcagcaaactacagcagatcaacacgttcactttggcaagcatca
tttgatgccttctttggactgctgacgaaatactgtgacagcaagtatgaaagtattgtg
cataggtttgccatgcacggatccaactctctgggtggacctgaagccaccaaagcagtt
agcagggagatgcctgttgagctgctgcgtgcgagtcttcctcacactaatgaacagcat
cgccagacactgctagattttgctcgtaaatctacgcatgtctctggtttcagccctaat
gctagccgtggacatatcaattctgaatcagttccaggttag
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