Setaria viridis (green foxtail): 117848211
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Entry
117848211 CDS
T07951
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03022
Basal transcription factors
svs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117848211
09124 Replication and repair
03420 Nucleotide excision repair
117848211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117848211
03036 Chromosome and associated proteins [BR:
svs03036
]
117848211
03400 DNA repair and recombination proteins [BR:
svs03400
]
117848211
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117848211
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117848211
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
117848211
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117848211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
NAMPT_N
Motif
Other DBs
NCBI-GeneID:
117848211
NCBI-ProteinID:
XP_034585432
LinkDB
All DBs
Position
3:complement(3840387..3845590)
Genome browser
AA seq
758 aa
AA seq
DB search
MRFDLDGMPVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS
LANPSRPLRLIYCTRTVHEMEKTLAELRLLFAHLPPAASRSLLALGLSSRKNLCVHPQAS
AAAARDSVDTACRRLTASWVREKAASDPESTPLCEFYETFDRAAAAGDLASLMPPGVYTL
ADLRALGRQRRVCPYFLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVFDEAH
NIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGN
LPISDAWLANPALPDDILREAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPIAF
VASIHSSAGIDQKMLRFCYDRLHSLMMTLEITDTDEFMHIQTICDFATLIGTYTRGFSII
IEPYDERMPDIRDPVIQLSCHDASLAIRPVFDRFETVVITSGTLSPIDLYPRLLNFNPVI
SRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVC
FFVSYSYMDGIVNSWHEMGILQDIMQYKLVFIETPDVVETTLALDNYRKACDCGRGAVFF
SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDAL
RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIA
REFLRRMAQPYDKTGSGGKKTLLTEEDLQNMAQDAMEM
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgcggttcgacctggatggcatgccggttcacttcccgtacgcggcgatctacccagag
cagcacgcgtacatgggggagctcaagcgcgccctcgacgcgcgcgggcacgcgctgctc
gagatgcccacgggcaccggcaagacggcggcgctgatctccctcatcacctcctactcc
ctcgccaacccgtcccgcccgctccgcctcatctactgcacgcgcaccgtgcacgagatg
gagaagaccctcgccgagctccgcctcctcttcgcccacctgccccccgccgcctcccgc
tccctcctcgcgctcggcctctcctcccgcaagaacctctgcgtccacccgcaggcgtcc
gccgccgcggcccgggactccgtcgacaccgcgtgccgccgcctcacggcctcctgggtc
cgcgagaaggccgcctccgacccggagtccacgccgctgtgcgagttctacgagacgttc
gaccgcgccgccgccgccggggacctcgcatccctcatgccgcccggggtgtacaccctc
gctgacctccgcgcgctcgggaggcagcggcgggtctgcccctacttcctcgccaggcag
atggtcaagtacgccaatgttgtggtgtacagctaccagtacctgctcgaccccaaggtg
gccagcattgtgtcaagggagatgcagaaggagtgtgtggtcgtgttcgatgaggctcac
aacatcgacaatgtctgcatcgaggcgctgagcgtcagcattcgcaagcagacgctggaa
ggtgctgagcggaatctacggcgtatctcgcaagagattgacaggttcaaggccaccgat
gccaataggcttcgtgctgagtacaacagacttgtggatgggctagcacagaggggaaat
ctaccaatatcggatgcttggcttgcaaatccggctttgcctgatgacattctgagggaa
gctgttcctggaaacataaggagagctgagcattttcttgctgtcttgcggcggcttgtg
agattccttgatggacggctggaaacagaaaatgttgagaatgaaatgcccattgccttt
gttgcttcgatccattcctcggctggaatcgaccagaaaatgctgaggttttgttatgac
cggctacactcactaatgatgacattagagataaccgatacagatgagttcatgcacatt
cagaccatctgtgactttgccacattgattggaacttacacacgaggcttttccataata
atagaaccatatgatgaaagaatgcctgacattcgtgatcctgtgattcagctgagttgc
catgatgcttcactcgcaataagacctgtttttgatcgttttgaaacagttgtgatcact
tctggaactctcagcccaattgatctttatcctcgtctcttgaattttaatcctgttata
agcagaagtttcacaatgtctttgacaagggattgtatttgtcccatggtcttgactcga
ggaagtgatcagctacctgtgagtacaaagtttgatatgcgtagcgatcctggtgtggtg
aggaattatggccgcctcttgctggaaatggcttctgctgttccagatggcatagtttgc
ttttttgtcagttattcttatatggatggcattgtcaacagctggcacgaaatgggaatt
ctgcaggacatcatgcaatataaattagtattcatcgaaaccccagatgtcgtcgagaca
actttggctcttgataactacagaaaggcgtgcgactgtggaagaggtgctgttttcttc
tctgttgccaggggcaaagttgctgaaggtattgattttgaccgacactatggcagactt
gttatcatgtttggtgttcctttccagtacacactcagcaggatattgcttgctaggttg
gagtacctaagagaaacttttcagataaaggagggtgacttcctgacatttgatgctttg
aggcaagcagcccaatgtgttggccgcgtgattcgctctaaagctgactatggaatgatg
atatttgctgacaagaggtacagtcggcatgataaacggtctaagttgcctgggtggata
ctgtcacacttgcatgatgctcacctaaacctgagcactgatatggctctgcatatagct
cgagagttcctccggaggatggcgcagccatacgacaagacagggagcggtggcaagaag
acgctcctgactgaggaggacctgcagaatatggcgcaggacgccatggagatgtga
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integrated database retrieval system
