Setaria viridis (green foxtail): 117848218
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Entry
117848218 CDS
T07951
Name
(RefSeq) polypyrimidine tract-binding protein homolog 3
KO
K14948
polypyrimidine tract-binding protein 2
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117848218
Spliceosome [BR:
svs03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
117848218
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RL
RRM_PARP14_3
P_C10
TGF_beta
Motif
Other DBs
NCBI-GeneID:
117848218
NCBI-ProteinID:
XP_034585440
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All DBs
Position
3:17912960..17917976
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AA seq
444 aa
AA seq
DB search
MAEPSKVIHIRNVGHEIAESDLLQLLQPFGLVSKIVMLRAKNQALLQMEDIHASVTALQY
YSSVQPSVRGRNVYMQFSSHQELTTDQSSHGRNSDQESEPNRILLVTIHHMIYPITVEVL
HQVFKAYGFVEKIVTFQKSAGFQALIQYHSRQEAVEAFGSLHGRNIYDGCCQLDIQYSNL
SELQVHYNNDRSRDFTNPSLPTEQRPRTSQQGYPDPAGLYAFQQPGASYAQMGRAAMIAA
AFGGTLPHGVTGTNERCTLIVSNLNTDKIDEDKLFNLFSLYGNIVRIKILRNKPDHALVE
MADGLQAELAVHYLKGAILFGKKLEVNYSKYPNITPAPDAHDYLNSSLNRFNSNVVKNYR
HCCAPTKMIHISALPQEITEEAILNHVSEHGSVINTKLFEVNGKRQALVMFETEEEATEA
LVSKHASTLEGNTIRISFSQMQSI
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggctgagccgtccaaggtaatccacatccgcaacgtcgggcacgagattgccgagtct
gatttactccagctgctgcagccgtttgggctggtctccaagatcgtcatgctgcgtgcc
aagaaccaagctcttctgcagatggaagacatacatgcctccgtgacagctctgcaatat
tacagttctgttcaacctagtgtaaggggaaggaatgtatacatgcaattctcatcccac
caagaacttaccacagaccagagttctcatggaaggaattctgatcaggagtctgaaccc
aaccgaatcctcttagttactatccaccacatgatctatcctataacggtggaggttcta
catcaagtattcaaagcttatggatttgtggagaagatagtcacatttcaaaagtcagct
ggttttcaagctcttatccagtatcactcgcgccaagaagctgtcgaagcatttggttct
ttgcatggaagaaacatatatgatggttgctgccagctagacattcaatattcaaacctc
agcgaactgcaagtccactacaacaatgaccggtctagggattttacaaatccatcattg
cctacagaacaacgtcctaggacctctcagcaaggttatcctgatccagctggtctctat
gccttccaacaacctggagcttcatacgcacagatgggaagggctgcaatgattgcagct
gcatttggtggaactttacctcatggagtgactggtaccaatgaacggtgcacgctcata
gttagtaatttgaacactgataaaattgatgaggataagcttttcaatctgttttctttg
tatggaaacatagtacgaatcaaaatattgcgtaataaaccagatcatgccctagttgag
atggctgatggtttgcaggctgagctagctgtgcactatctgaagggtgcaattcttttt
gggaagaaacttgaagttaactactcaaagtaccccaacatcactcctgcccctgacgct
catgactacttaaattcaagccttaaccggttcaacagcaatgtggtaaagaactaccga
cattgctgtgctccaacaaagatgatccacatttctgccctcccacaagagatcactgag
gaagcaatcctgaaccacgtgtctgagcatggttctgtcatcaacacaaagctgttcgag
gtgaacggcaagaggcaggctcttgtcatgtttgagacggaagaggaggcgaccgaggcc
ctcgtgtcgaaacacgccagcacactggaggggaacacgatccggatctcgttctcccag
atgcagagtatataa
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