Setaria viridis (green foxtail): 117848237
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Entry
117848237 CDS
T07951
Name
(RefSeq) LEC14B homolog isoform X1
KO
K11801
DDB1- and CUL4-associated factor 11
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117848237
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
117848237
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML
NBCH_WD40
Beta-prop_HPS5
PROPPIN
WDR54
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Cytochrom_D1
Beta-prop_WDR19_1st
Beta-prop_NUP159_NUP214
WDR90_beta-prop_4th
PQQ
WD40_like
F420H2_quin_red
WD40_2
NusG_II
Motif
Other DBs
NCBI-GeneID:
117848237
NCBI-ProteinID:
XP_034585462
LinkDB
All DBs
Position
3:3801079..3807122
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AA seq
469 aa
AA seq
DB search
MRGVRRSARGEASGKAHRELDRFDMANEVFHLTRARSELCHRARGATSARRKRPFSTFEL
LSARECGRTGGAGFAAADRAYVGSRHIPTKGPWGVDEVDSEAYVSQFSADGSLLVAGFRG
SRIRVYDVERGWKIHKDISCRSLQWTVSDIALSPDQQFLAYASLSPIVHIVNVQSSGKES
HANVNEIHEGLDFTGNEHDEDFGIFSVKFSKDGKEVVIGNNERSIYVYDLAANKVSVRIR
AHTDDVNAVTFADESGNILYSGSDDTLCKVWDRRCLVGGKSAGLLTGHLDGVTFIDSRGD
GRYFISNCKDQRIKLWDIRKMSSAVRARPVKMVDWDYRWMPFPSEAHHFKHPDDQSLATY
RGHSVWKTLIRCYFSPMHSTGQRYIYSGSSDKSVYIYDMVTGKTIERLSWHGSIIRDCTW
HPYHPTLVTSSWDGYLARWEASGNNDDLSMPKIMRTRWPVRLGAAAPTE
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggagtgcggcggagtgctcgcggggaggcgtccgggaaggcgcaccgcgagcta
gaccggttcgacatggccaacgaggtgttccatctcaccagggccaggtcggagctctgc
caccgggctcgaggcgccacttcagcccgccggaagaggcccttctcgacgttcgagctc
ttgtcggcgagggagtgcggccgcacgggcggcgccgggtttgctgcggccgatcgcgcc
tatgttggcagcaggcacatcccgaccaaagggccgtggggcgtcgacgaagtggacagc
gaggcctacgtctcgcagttctctgctgatgggtcgctgctcgtcgctgggtttagggga
agccgcatcagagtttacgatgtcgagagagggtggaagattcataaggatataagctgc
aggagtctgcagtggacagtttcagatattgctctctcacctgatcagcaattccttgcc
tatgcaagtttgtcgcctattgttcacattgtgaatgtgcagagttctggaaaggaatct
catgctaatgttaatgaaattcatgagggattggatttcactggtaatgagcatgatgag
gacttcggaatattttctgttaaattctcaaaagatggtaaagaagttgttattgggaat
aatgaaagatcaatatatgtttatgatcttgcagcaaataaagtgtcagtccgcatccgt
gctcatacggatgatgtcaatgctgtgacctttgctgatgaaagtggcaatatattgtac
tctggaagtgatgatactctctgtaaggtgtgggacaggcgttgccttgttgggggaaaa
tcagcaggtcttttgacaggtcatttagatggagttacatttatcgatagccgtggtgat
gggcgttatttcatctccaattgcaaggatcagagaatcaaactttgggacatcaggaaa
atgtcttctgctgtgagagcgcgcccagtcaaaatggtggactgggactataggtggatg
ccattcccatcagaagcccatcattttaagcatccagatgaccagtctctggctacatac
agaggtcattcagtttggaaaacacttatccgttgctacttctcccctatgcacagcacg
ggccagaggtacatatactcaggatccagtgacaagtctgtatatatttacgacatggta
actgggaaaactattgagaggctttcgtggcatggctcgatcatcagagactgcacctgg
catccgtatcatccaacgctcgtcacctcctcctgggacggctatcttgcccggtgggag
gcctcggggaacaacgacgacctttcaatgccaaagattatgagaacgaggtggcccgtg
cggttgggcgcggcagcacccacggaataa
DBGET
integrated database retrieval system