Setaria viridis (green foxtail): 117848320
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Entry
117848320 CDS
T07951
Name
(RefSeq) probable DNA helicase MCM8 isoform X1
KO
K10737
DNA helicase MCM8 [EC:
5.6.2.4
]
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svs03032
]
117848320
03400 DNA repair and recombination proteins [BR:
svs03400
]
117848320
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
117848320
DNA replication proteins [BR:
svs03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
117848320
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
117848320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MCM
MCM_OB
MCM_lid
WHD_MCM8
AAA_5
Mg_chelatase
AAA_3
Sigma54_activat
AAA
AAA_16
Motif
Other DBs
NCBI-GeneID:
117848320
NCBI-ProteinID:
XP_034585557
LinkDB
All DBs
Position
3:complement(16255315..16264517)
Genome browser
AA seq
780 aa
AA seq
DB search
MYADTMKGHQPKGSTIDVTPVEKRLADVWKRYFPEEAGFSESDRKVRIAAALFESSFSTV
VKGLQSRVEDDGSDILSLPIDFKQLQESCVFIKDELEESPKEVLLCMGAAAHLALCSGKI
NKVNIRLYNTGATIALKKLKAAFIKKLVTVRGTVVKVSTVKPLVLELEFRCMKCGKENPR
VFCDGKFSPPMSCTIQGCRSRTFTPDRSSAKLMDFQKIRIQELVSADNHEEGRVPRTIEC
ELTEDLVDCCIPGEIVTVTGIVKVLNNMDVGGGKSRSKNQGLYYLYLEAVSVRNLKTCAV
SDEEIRARGICDFQSNTERDRDFAVNYKKEHGADVFRQILQSFCPSIYGHELVKAGITLA
LFGGVQKNSMDQDKVPVRGDIHVVVVGDPGLGKSQLLQAAAAVSPRGIYVCGNTTTKAGL
TVAVVKDSMTNDYAFEAGAMVLADRGICCIDEFDKMSAEHQALLEAMEQQCVSVAKAGLV
ASLSARTSVLAAANPVGGHYDRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSD
HIIALHTNEGDNFKSNKRIRTVSHNGDPGFGVVGNSVASRLRLHPEKDKDFAPLAGQFLR
KYIAYSREHVFPRMSKAAAEILKKFYLGLRNRSTSADGTPITARQLESLVRLAEARARVD
LREEVTREDAQDVVDIMKESLYDKYVDEHGFVDFARSGGMSQQKEARTFLNALNKESELQ
RKDCFSRTEIYNLADKISLRVPDLDALVDNLNSLGYLLLKGGMYQLVTASYSQCQPTRSK
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgtacgccgacacaatgaagggccaccaacccaaagggtccactattgacgtcaccccc
gtcgagaagcggctcgcggatgtctggaagaggtacttccccgaggaggcagggttctcg
gagtccgaccgcaaggtccgcatcgccgccgcgctgtttgaatcctccttctccacggtg
gtgaagggccttcagtcacgggtcgaagatgatggcagtgacattttatctcttccgatt
gatttcaagcagcttcaggagtcatgcgtgtttattaaagatgaactcgaggaatctcca
aaagaagtcttgctttgcatgggagctgcagctcatctggctttatgttcaggaaagatc
aacaaggtcaatattaggctttacaatacgggggcgactattgctttgaagaaactaaaa
gcagcctttatcaagaaacttgtcaccgtgcgcggcactgttgtaaaagtcagcactgta
aaacctcttgtcctggagctggaattccgttgcatgaagtgtggtaaagaaaacccacga
gtgttctgtgatgggaagttttcacctccaatgtcctgtaccattcagggatgcaggagc
agaaccttcactccagatagatctagtgcaaagttgatggatttccagaaaataaggata
caggagcttgttagtgctgacaaccatgaagaaggccgagtgccacgaacaattgagtgt
gagcttacagaagacctcgttgattgttgcatccctggagagatagtaacggtaactgga
atcgtcaaagtactgaacaatatggatgttggaggagggaagtccagaagcaagaaccag
ggtttatactacctgtacctagaagcagtttcagtgagaaacctgaagacctgtgctgtt
tcagacgaagaaattcgggctagaggaatttgtgattttcagagcaatactgaaagggat
cgtgattttgctgtcaattataaaaaagaacatggtgctgatgtatttcgccaaatactt
caatccttttgtccctccatctatgggcatgaacttgtaaaagctggtatcacacttgct
cttttcggcggtgtgcagaagaactcaatggatcaagacaaggtccctgttagaggagac
attcatgttgttgtagttggtgatccaggcctaggcaagagccaactccttcaagctgca
gcagctgtttccccacgaggaatatatgtatgtgggaatactacgacaaaggctggccta
actgttgctgtggttaaagattctatgacaaatgattatgcatttgaggctggtgcaatg
gtccttgctgatcgtggaatatgctgtattgatgagtttgataaaatgtctgcagaacat
caggctttacttgaagccatggagcagcaatgtgtttctgttgcaaaggctggccttgta
gccagtttatcagctcgtacctctgtgttggcagctgcaaatcctgttggtggtcattat
gaccgagcaaaaacagtgaacgagaatctaaagatgagtgctgccctcctgtctcgtttt
gacttggtttttattctactcgacaagccagacgagttactagataaaagagtgtcagat
catataatagctcttcataccaacgaaggtgataatttcaaatccaacaagaggatcaga
acagtgtcacataatggtgatccagggtttggagttgttgggaattcagtggcttcaaga
ctgagactacacccagagaaagataaggatttcgctccattagctgggcaatttcttcgc
aagtatatagcttattcaagagaacatgtattccctagaatgtcaaaggcagcagctgaa
attttgaaaaaattttatttgggattgagaaaccgcagcacttctgctgacggtacaccc
atcacagccaggcagttggaaagcctagtcagattagctgaagctcgtgctcgcgtggat
ctaagagaagaagtgaccagagaagatgctcaggatgttgtagatatcatgaaggaatct
ctctatgacaaatatgttgatgaacatggttttgtcgattttgctcggagcggtgggatg
agccaacaaaaggaggcaaggacgtttctgaatgcgttaaacaaggaatctgagttgcaa
cgaaaagattgcttttcaagaactgagatttacaacttagctgataagatcagcttgcga
gttccagacttagatgctcttgttgataatttgaacagtctcggttaccttctgctaaaa
ggagggatgtatcagctggtgactgcgtcatattcacagtgccagccaacaaggtcaaaa
tga
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