Setaria viridis (green foxtail): 117848348
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Entry
117848348 CDS
T07951
Name
(RefSeq) flowering time control protein FY
KO
K15542
polyadenylation factor subunit 2
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117848348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117848348
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117848348
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_IFT122_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
EIF3I
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
DSE1_N
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
ASA1
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_WDR19_1st
CFAP251_N
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_WDR75_1st
PAC11
Beta-prop_NOL10_N
eIF2A
Beta-prop_DCAF4
Beta-prop_SCAP
NBCH_WD40
WD40_RFWD3
Tricorn_2nd
Beta-prop_Vps41
Beta-prop_HPS5
WD_LRWD1
WDR54
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
117848348
NCBI-ProteinID:
XP_034585605
LinkDB
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Position
1:7399004..7405369
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AA seq
704 aa
AA seq
DB search
MMQQQQQQLPPPPQHQPPQGGGGGEFYRGPPMRQLSAASSTNLTPEYPAHPGPPQQQQHQ
PPYDAYGDNFGAKRMRKPVQRRTVDYTSSVVRYVQARMWQRDARDRFTLQPTPAAVLDML
PSVAYPDNPSTSYAAKFVHSSINKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF
EMILQAHDQPVRSMVWSHNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHRESVRGLSFSR
TDLKFCSCSDDRTVKVWDFARCQEEKSLTGHGWDVKTVDWHPTKSLLVSGGKDYLVKLWD
AKSGRELNSFHGHKNIVHCVKWNQNGNWVLTASKDQIIKLYDIRSMKELESFRGHTKDVT
ALAWHPFHEEYFVSGSFDGAIFHWLVGHEAPQIEINNAHDNSVWDLAWHPVGYLLCSGGN
DHATKFWCRNRPGDITRDRYNSGQTQGYVDQHPAFGARAMGGFQMPEPPTPGPFAPGLSR
NEGTIPGIGVAMTLDGSDQGEQRPSIPGLPPGQPPLPPGPHPSQLLGQQQQYQQMPQQQH
SQFRPPPPNMPQLQPPAHMLSHSQGSRPTLPQLPPMGGPSMPSPVNPPLPPMPHPTAMQG
SQNQMMPQMPQHMMGLNQMHPGSVPPGNVPPMGGFPSAMGNIQGASGSSGIQNFPMGGIY
NRPQGQMAPQGQMTSIPGLSSYQGMGNVGLTQPPPPPQHPPPRG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagcagcaacagcagcagctgccacctccgccgcagcaccagccgccccagggc
ggcggcggcggggagttctaccgcggaccgccgatgcggcagctatcggcggcgtcctcc
accaacctcacccctgagtacccggcgcacccgggtcccccgcagcagcagcagcatcag
ccgccatacgacgcttatggtgacaattttggtgctaaaaggatgcggaagcctgtccag
cgacgaacagtggactacacaagcagtgttgtccgttatgttcaagctcgcatgtggcag
cgggacgcgagggacagattcacattacagccaactcctgctgctgtcctagatatgtta
ccatctgttgcttatccggataatccttccacaagttatgctgccaaatttgtgcattct
tcaatcaataagaaccggtgctctatcaatcgtgtcttgtggacccctacaggccgtcgg
cttatcactggatcacaaagtggtgaatttacgctatggaatggacaatcttttaatttt
gaaatgatacttcaggctcatgatcaacctgtgagatcaatggtttggagtcacaatgaa
aactggatggttacgggtgatgatggtggcgcaatcaagtattggcaaagtaacatgaac
aatgtcaaagtgaataaaacagctcacagagaatcagttcgtggtttaagcttttctaga
acagacttgaagttctgctcctgctccgatgacagaactgttaaggtttgggactttgca
agatgccaagaggaaaaatcattgactggccacggttgggatgttaaaactgtcgattgg
catcctacaaagtctttattggtttcaggtggtaaagactatcttgtgaaactctgggat
gcaaaaagtgggagagagctaaactcattccatggtcataaaaacattgtgcattgtgta
aagtggaatcagaatgggaactgggtactgactgcctcaaaggatcagattatcaagctg
tatgatataagatccatgaaagagcttgagtccttccgtgggcacaccaaggatgttact
gcgttggcatggcatccatttcatgaagaatattttgttagcgggagctttgatggagca
atatttcattggttggtcggccatgaagctccacagatcgaaataaacaatgcacatgac
aatagtgtgtgggatcttgcctggcatcctgtaggctatctactttgcagtgggggcaat
gatcatgctacaaagttctggtgtagaaacaggcctggtgatattacccgtgatagatac
aacagtggccagacacaaggttatgttgaccaacatcctgcttttggtgctcgtgctatg
ggtggattccagatgcctgaacctccaacacctggaccgtttgctcctggattgtcacgt
aatgaaggcacaatccctggcattggggttgcaatgaccttggatggatctgatcaagga
gagcagagaccatctattccaggtcttccacctgggcaaccccctctgccacccggtcct
catccatcacaacttcttgggcagcagcaacaataccaacagatgcctcagcagcaacat
tcccagtttcggccgccacctccaaatatgccccaattgcagccaccagctcacatgctt
tcacattcgcaaggatctcgtccgacacttccccagcttccaccgatgggcggaccatca
atgccatcaccagtgaatccaccacttccaccaatgcctcacccaacggcaatgcaaggt
tcacagaaccagatgatgccccaaatgccacagcacatgatgggcctaaatcagatgcat
cctggttctgttcctcctggcaatgtacctccaatgggtgggttcccaagtgcgatggga
aacatccaaggagcatcaggttcatctggcatacaaaattttcctatgggtggcatctac
aaccgacctcagggacaaatggctccacaaggacaaatgacatccattccaggtctaagc
tcttaccagggaatgggcaatgttggccttacacaacccccaccaccaccacagcaccca
ccacctcgtggttga
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