Setaria viridis (green foxtail): 117848412
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Entry
117848412 CDS
T07951
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
svs01009
]
117848412
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117848412
Enzymes [BR:
svs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
117848412
Protein phosphatases and associated proteins [BR:
svs01009
]
HAD phosphatases
Fcp/Scp phosphatases
117848412
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
117848412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
Motif
Other DBs
NCBI-GeneID:
117848412
NCBI-ProteinID:
XP_034585707
LinkDB
All DBs
Position
3:complement(3360002..3363946)
Genome browser
AA seq
739 aa
AA seq
DB search
MSSTPAAAAGPAATTRTVASAVLRVQMALLDGAAASNEPLLHAAASALLSRADYDDVVTE
RTIADACGNPACPNPLPAATTAGGPRFHISLREHRVYDLEEARKFCSERCLVASAALAAS
LPADRPFGVPPERLDAVVALVECGGAGEGQGLGFRDADGKKDEGRKLEIKEKEVAGAGEV
TLQDWVGPSDAIEGYVPRRDRTTEGQKPAKKNKVAGPELSGIENVDCRNAAPGEDGMAGS
SPSAETHVSSEVIAEKMGNMVLSENTKTPRKMTTKTPSKMLKQEDDNNMLSSCISDSIEK
QLEDVVLEEKRGAKKTKASKASSRSQKSKSRKRPGGSDGHEVDFTSTIIIGDASTNMEQG
TMNQYNYFSSSILTDNYASSSQSGAKGPMQGYAEQLYKEFSEAVSIGKDETSDEKMKPAL
KSSMKAPGSKSGSQSVTWADENGSVLETSKLYESPSSSIKQSEEGMDISLRRASAEACAA
AFIEAAEAISSGTSEVDDAVSKAGIIILPDTLHPKQYSNEKSSGADEESEIDRDVLKWPK
KTVLLDTDMFEVDDSWHDTPPEGFSLTLSGFATMWAALFGWISRASLAYVYGLDGCSVED
LLIANGREYPEKIVLKDGHSAEIRRALDTCVCNALPVLVSNLRLRIPVSKLEITLGYLID
TMSFFDPLPSLRSRQWQLVVLVMLDVLSIHQLPALAPVVSNSKLVQKMLNAAQVSREEYE
SMVDLFLPFGRSIQTFMQI
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgagctccacgcccgctgcggccgccgggccggcggcgacgacgcgtacggtggcctcg
gcggtgctccgcgtccagatggcgctcctcgacggcgccgcggcatccaacgagcccctc
ctccacgcggccgcctccgcgctcctctcccgcgccgactacgacgacgtcgtcaccgag
cgcaccatcgccgacgcctgcggcaaccccgcgtgccccaacccgctccccgcggccacc
acggccggcgggccccggttccacatctccctccgcgagcaccgcgtctacgacctcgag
gaggcgcgcaagttctgctccgagcgctgcctcgtcgcctccgcggccttggcggcgtcg
ctcccagccgatcggcccttcggggtcccgcccgagcggctcgacgcggtggtcgcgctc
gtcgagtgcggcggcgcgggggaggggcaagggttagggttccgggatgcggatgggaag
aaggatgaggggaggaagctggagatcaaagagaaggaggtcgctggggctggggaagtc
acgctgcaggactgggttggtccctcggatgccattgaggggtatgtgccgcgtcgtgac
cgcaccactgaagggcaaaagccagctaagaagaacaaagttgctggacctgaactgtcc
ggaatcgagaatgtggattgtaggaatgctgctcccggtgaagatggcatggcaggttca
tctccatcagctgaaacacacgtgagctcagaggtaatagctgagaagatgggcaacatg
gttcttagtgagaatacaaagactcctagaaagatgacaactaaaaccccatcgaagatg
ttgaagcaagaggatgataacaatatgctgtcatcttgcatatctgattccattgagaag
cagctggaagatgtagttttggaagagaaaaggggtgctaagaaaacgaaagcaagtaaa
gcatcatcaaggtcacagaagagtaagtctagaaaaaggcctggtggaagtgatgggcat
gaggtggacttcacgagtaccatcattattggggatgcttcgacaaacatggagcaaggg
actatgaatcagtataactacttttctagttctatattgacagacaattatgcctcatca
tctcagtctggagccaaaggtccaatgcaaggttatgctgaacagctatacaaagaattt
agtgaagcagtgagcattggaaaagatgagacaagtgatgagaagatgaaacctgcacta
aaatcttcaatgaaggcccccgggtctaagagcggatcacagtctgtgacatgggcagat
gagaatggaagtgttctagaaacaagcaaactatatgaaagcccttcaagtagtataaaa
cagtctgaggaaggcatggacatttcactaaggcgtgcatctgcggaggcttgtgctgct
gcattcattgaggcggcagaagctatttcttcaggcacgtcagaagtagatgatgctgtt
tcaaaggcaggaatcatcatattgcctgatacgcttcacccgaaacaatacagcaatgag
aaaagcagtggcgcagatgaagaatctgaaattgatagggatgtcttgaagtggcctaag
aagactgtgcttctagacacagacatgtttgaggtcgatgattcttggcatgacacgcct
ccagaaggtttcagtctaacactgtccggttttgcaacaatgtgggctgcgctttttggg
tggatctcccgggcatctttggcctatgtgtatgggcttgatgggtgttctgtggaagat
ttattgattgccaatgggagggaatatcctgagaaaatagttttgaaagatgggcactcg
gcggaaattagaagagctctagatacatgtgtttgcaatgccctgccagtacttgtgtca
aacttgaggttgcggatcccagtttcaaagttggagattactctgggctacttgattgac
acaatgtcatttttcgatccattgccatctctgcgatcaaggcagtggcaattggtggtt
ctggtaatgcttgatgtgctctctattcatcagcttcctgctcttgctccagtcgtctca
aattcaaagcttgtgcaaaagatgctgaatgccgctcaggttagcagagaggagtacgag
tcgatggttgatctcttcctcccttttggaagatccattcagacattcatgcagatatag
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