Setaria viridis (green foxtail): 117848474
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Entry
117848474 CDS
T07951
Name
(RefSeq) transport inhibitor response 1-like protein Os05g0150500
KO
K14485
transport inhibitor response 1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
117848474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117848474
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117848474
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
LRR_At5g56370
F-box_5
LRR_6
LRR_4
F-box-like
F-box
LRRCT_2
Motif
Other DBs
NCBI-GeneID:
117848474
NCBI-ProteinID:
XP_034585791
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Position
3:2385890..2392030
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AA seq
590 aa
AA seq
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MGRGGSRAAPAAAMPPWHALPDEVWEHAFSFLPADSDRGAAAAACRSWLRAERRSRRRLA
VANCYAASPQDAVERFPSVRAVEVKGKPHFADFGLVPPGWGAAAAPWVAAAADGWPLLEE
LSFKRMVVTDDCLEMIAASFRNFQVLRLVSCEGFSTAGLAAIAAGCRNLRELDLQENEIE
DCSIHWLSLFPESFTSLVTLNFSCLEGDVNIAVLERLVTRCRNLKTLKLNNSIPLDKLAS
LLRKAPQIVELGTGRFSADYHLDLFSKLEAAFAGCKNLRRLSGAWDAVPEYLPAFYCVCE
GLTSLNLSYATVRGPELIKFVSRCKNLQLLWVMDLIEDHGLAAVASSCNKLQELRVFPSS
PFDAAEQVSLTERGLVDVSAGCPMLESVLYFCRRMTNEALITIAKNRPNFTCFRLCIIEP
HTPDYITHQPLDAGFSAIVESCKGLRRLSVSGLLTDRVFKSIGAHADRLEMLSIAFAGNS
DLGLHYILSGCKSLKKLEIRDCPFGDKPLLANAAKLETMRSLWMSSCSLTLGACRQLARK
MPRLSVEVMNDPRRACPLDSLTDESPAETMYVYRTIAGPRSDTPTWVQIV
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgggacgcggcggctcgcgcgcggcaccagccgccgcgatgccgccgtggcacgcactc
ccggacgaggtctgggagcacgccttctccttcctccccgcggactcggaccggggcgcc
gccgcggccgcctgccgctcctggctccgcgccgagcgccgctcgcgccgccgcctcgcg
gtagccaactgctacgccgcgtccccgcaggacgccgtcgagcgcttcccatccgtccgc
gccgtcgaggtcaagggcaaacctcacttcgcggacttcgggctcgtaccgcccggatgg
ggtgccgccgctgcgccatgggtcgccgccgccgccgatgggtggccgctgctcgaggag
ctcagcttcaagcgcatggtcgtcaccgacgactgcctcgagatgatcgcggcctccttc
aggaacttccaggtgctgcgcctcgtctcctgcgagggattcagcaccgcggggctcgct
gccattgccgccggctgcagaaatctaagagaacttgacctgcaggagaatgagattgag
gattgctctattcattggctcagtctctttccggaatccttcacttcgttggtaactcta
aatttttcatgcttagagggggatgttaatatagctgtacttgaacgactggtaaccaga
tgtcgcaacctcaagactctcaagctcaacaattctatacctctcgacaagcttgctagc
cttcttcgcaaagctcctcagattgtagagcttggaacaggaagattctctgcggattac
catctggatctcttttcaaagcttgaagcagcatttgctggttgtaaaaacctaagaagg
ctttctggggcttgggatgctgttccagagtacctgccagcattttattgcgtatgcgag
ggcctcacatcactaaatctgagttatgctactgtacgaggccccgaactgataaaattc
gttagcagatgcaaaaatttgcaactcttatgggtgatggatttaattgaggaccacggt
cttgctgctgtggcatcatcttgtaataaactgcaggagttgcgggtcttcccttcttct
cctttcgatgcagctgagcaggtttcattgactgaaagaggtcttgttgatgtctctgct
ggttgcccgatgttggaatcagtcctctacttctgcagacggatgaccaatgaggccctt
attaccatcgcaaagaaccggcccaacttcacttgcttccgcctatgcatcatagagcca
catacaccagattacatcacgcatcagcctcttgatgcaggttttagtgccattgtggaa
tcatgcaagggccttaggcggctttctgtctcaggccttctcacagaccgtgtatttaaa
tccatcggggcacatgctgatcgtctcgagatgctctcaatcgcctttgctgggaacagc
gacttgggccttcattacatcctttcgggctgcaagagcttgaagaagctggagatcagg
gactgcccattcggtgataagcccttgctggcaaatgctgccaagctggagacaatgcga
tccctttggatgtcgtcgtgctcactgaccctgggcgcatgccgacagcttgcacgcaag
atgcctcgccttagtgtggaggtcatgaatgatcctcgacgtgcatgccccttggactca
cttacagatgagagccccgccgagacgatgtatgtctaccggacaattgcaggtccaagg
tctgacacaccaacctgggtccagattgtttaa
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