Setaria viridis (green foxtail): 117848506
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Entry
117848506 CDS
T07951
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117848506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117848506
04121 Ubiquitin system [BR:
svs04121
]
117848506
03036 Chromosome and associated proteins [BR:
svs03036
]
117848506
03400 DNA repair and recombination proteins [BR:
svs03400
]
117848506
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
117848506
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
117848506
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
117848506
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
117848506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-C3HC4_2
BRCT_2
zf-HC5HC2H
zf-RING_2
zf-C3HC4_4
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
RTT107_BRCT_5
zf-RING_6
zf-RING_5
zf-HC5HC2H_2
zf-RING_10
PHD_NSD
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
117848506
NCBI-ProteinID:
XP_034585828
LinkDB
All DBs
Position
3:complement(13434883..13439828)
Genome browser
AA seq
965 aa
AA seq
DB search
MADAGSLEKMGRELKCPICLSLLSSAVSITCNHIFCNGCLMESMKSASSCPVCKVPFRRR
EIRPAPHMDNLVSVFKSMEVAAGTSIVATPLAPSPKVADGSQCGGNSGSKPKSSRKKKVA
SKKKNNTSKAAAASASCPTTKPSISMNKRIHVTLFPECETPTRPKKIMKPEEQKTKLNGD
AEEDKNKTLNSDRPESPSLSPFFWLRGEEQEEGGTAGSLSEPLSLDTPLRHNAPTFSDIM
DSDDEIPNNVTPNSKAEVSEIFDSEIFEWSQRPCSPELRSTPLKKQGKLKKILDQITETD
DVEDMNLGGSFDKLDHESNAAQLVNGAEIKKRKSARARTKKNSKLPDCGKLCTKGCDAVH
QVTDIPVSITTMPGQKNSGKKESNTSSGRSKVSCNSSRFLCSSDKSMETFPPQENSLEIE
ASENQLSERSHKNDKDSRRKLERTGNSALKTAENKSEQTSKRIRRISHGAVADEIRVISV
AENKTESPQHHTLIKGCTRHKHLDGRSKQSMESNIGPNTPSPLPGRCQFNEAIRTVPSVK
NFLVKNGSVKSIEQSDYSETIRSARNAVLQKCEEKAPMASCAFCQSDDITEESGKMVHYH
NGKQVPAEFNGGTGVIHSHKNCLEWAPDVYFKDDSVFNLTTELARSRRIKCACCGIKGAA
LGCFDMSCRKSFHFTCAKLIPECRWDDENFVMLCPLHQSSKLPIETSESKKKSQRRLTPK
GSAQVRPCQVYGNKWTWPSGSPQKWVLCCSALSPAEKGIVSEFAKIAGVPISTSWNPSVT
HVIASTDLSGACKRTLKFLMAILNGKWVVSIDWVKTCMEHMEPVDEVRFEVTTDVHGTRE
GPKLGRQRVINKQPKLFAGIHLYLHGDYTQSYRGYLQDLVVAAGGTVLQRKPVSRDQQKL
LDDSSLILIVYSVENQDKGNPKSKDGVDTGRSQADAQALACASGGKVVSSAWIIDSISAC
NLQPL
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcggggagcctcgagaagatgggccgggagctcaagtgccccatatgcttg
agtctgctgagttcggcggtgtccatcacctgcaaccacatcttctgcaacggctgcctg
atggagtccatgaaatctgcttccagctgcccggtgtgcaaggtcccattccgccgaaga
gaaatacggccggcgccccacatggacaatttggtgtctgttttcaaaagtatggaagtt
gcagccggtactagtattgtggcaacacctctggctccttcacccaaggttgcagatgga
tcacaatgtggtgggaacagtggcagcaagcctaaaagctcgcggaaaaagaaggtagca
tcaaagaagaaaaacaatacatcgaaggctgctgcagcttctgcatcttgtcctactaca
aagccttcaatctccatgaacaaaagaatacacgtgacgctattccctgaatgtgagacg
ccaacaaggcccaaaaagattatgaagcctgaagagcaaaaaactaagctaaatggtgat
gctgaagaggacaaaaataaaacattgaattctgatagaccagaaagcccttcattgtca
ccatttttttggctgaggggagaagagcaagaagaaggtggcactgctggaagtttaagt
gaaccactatcattggacacacccttgcgtcacaatgcacctaccttcagcgatatcatg
gattctgatgatgaaatacctaataatgtgactcctaatagcaaagctgaggtttcagag
atatttgacagtgaaatctttgaatggagtcaaagaccttgctcccctgagctgcgatct
actccgctgaaaaaacagggtaaattgaagaaaattctagatcaaatcacagagacagat
gatgttgaggacatgaatcttggtggttcatttgataaattggatcatgaaagtaatgcc
gctcagcttgtcaatggtgcagaaattaagaagagaaagtcagcaagagctaggaccaag
aagaattcaaaactgcctgattgtggtaagctatgtacaaaaggatgtgatgctgttcac
caagttacagatatccctgtaagtatcaccacaatgccaggccagaagaacagcggtaaa
aaggagagcaatacttcgagtggaagaagcaaggtctcttgcaacagcagtagatttctt
tgctccagtgataaatctatggagacatttcccccccaagaaaatagtttggagattgaa
gcatctgaaaaccagctttcagaaagatcccataaaaatgataaagacagtcgacgaaaa
cttgaaagaacagggaatagtgcattgaagactgcagagaacaaatctgaacaaacaagt
aagcggatcagaagaatttctcatggtgctgtagctgacgagataagagttatctcagtg
gctgaaaataaaacagaatcaccgcagcatcacactctcataaaaggctgcacccggcat
aaacacttggatggtagaagtaaacaaagcatggaatcaaacattggtccaaatacacca
agccctttacctgggagatgccaatttaatgaggccatacgcacagttccttcagtaaag
aatttcttggttaagaatggtagtgtaaaatctattgaacaatcagattactcagaaact
atcagatctgcacgcaatgctgtcctgcagaaatgtgaggaaaaagctcctatggcttcc
tgtgctttctgccagtctgatgatatcacagaggagtctggcaagatggttcactaccat
aacgggaaacaagtgcctgcagaatttaatggagggactggtgtaatacattcccacaaa
aactgcctggagtgggctcctgatgtctacttcaaagatgactctgtgtttaatcttaca
actgagttggctagaagtagaaggatcaaatgtgcttgctgtggaattaaaggtgctgca
cttggatgctttgacatgagttgtcgaaaaagcttccacttcacctgtgctaaattgatc
ccagaatgcagatgggatgatgaaaactttgtgatgttatgccctttgcaccaatcttca
aagttgccaatagaaacttctgagtcgaaaaagaagtctcaaaggagactaacaccaaaa
gggtcagctcaagtaagaccttgtcaagtttatggtaataaatggacatggccatctgga
tcaccacagaagtgggttctctgctgttcagccctttctcctgcagaaaagggtattgta
tcagaatttgcaaaaatagctggtgtgccaatctcaacaagttggaatcccagtgttact
catgttattgcatcaaccgacctgtctggtgcttgcaagcgcacacttaagtttctgatg
gcaatcctgaatggcaaatgggttgtctccatagactgggttaaaacttgcatggaacat
atggaacctgttgatgaagtgagatttgaagttaccactgatgtacatgggactagagag
ggtcccaagttaggcagacaaagagttatcaacaagcaacctaaattatttgccggcatt
catctctacctccatggagattacacccagtcctacaggggctacctgcaagaccttgtg
gttgcagccggtggaactgtccttcagaggaagcctgtgtcaagagatcagcagaagttg
cttgatgacagttcccttatcctcattgtctacagcgttgagaatcaagacaagggtaat
ccaaaatccaaggatggcgtcgatactggtcgtagccaagctgatgctcaggctctggcc
tgcgcctctggtggcaaagttgtgagcagcgcatggatcattgactccatttcagcttgc
aaccttcaacccctttaa
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