Setaria viridis (green foxtail): 117848658
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Entry
117848658 CDS
T07951
Name
(RefSeq) phragmoplastin interacting protein 1 isoform X2
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117848658
03036 Chromosome and associated proteins [BR:
svs03036
]
117848658
Spliceosome [BR:
svs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
117848658
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
117848658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
RRM_1
zf-CCHC_6
RRM_7
Nup35_RRM_2
RBD_DEAH11
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
117848658
NCBI-ProteinID:
XP_034586038
LinkDB
All DBs
Position
3:4066316..4070627
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AA seq
629 aa
AA seq
DB search
MVLARKKLKQKLHTLLPAGEAEVEAHGEEAQAVKERLASSKRPRPKRPPRKKSLPEVVCQ
TEEEGKEEVERRREERRKEKKEKRRIRRLMEAEAAASAAETQQVGGETGAEAEGEEETSE
EADPAVGSHQPVVAEDSSEQNMNKMEVTKLGVGSNSPVVAENRQQDHKVELAETGVGSNN
PVVAEHREQSIKKVYVGGIPYYSSEDDIRSFFEGCGSITAIDCMTFPESGKFRGIAILTF
KTDAAAQRALAMDGADMGGFYLKIQPYKHNREKEDFAPKLIEGYNRTYVGNLPWDITEDD
LKKFFSDCKISSIRFGTDKETGDFKGYAHIDFADGTSLAVALKLDQKVIKGRPVRIRCAV
PKKENQKISDNGNSDPSKSKIRTCYQCGTPGHLSSACPNKKDSDVRKCYECGTPGHLSSA
CPNKKNSEVISGENKGTVDSAIASSNKRRTCYECGIPGHLSSSCPNKKGVEFISDEKNAN
VDSATASSKKRRTCYECGTPGHLSSACPNRRTEDSVQNNREPVDDAKSAPTIVPEETKPG
DESNSVPSKKRRKCYECGISGHLSSACPNKKVAEVVDNAVERDTGSTIAEEKANGDTKSA
PAKKKKRRTCYECGIAGHLSSECPNKAAA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggtgctcgcgcgcaagaagctgaagcagaagctgcacacgcttctcccggccggtgaa
gccgaggtggaggctcatggcgaggaggcgcaggccgtgaaggagcggcttgcctcctcc
aagcggccgcgccccaagaggccgcccaggaagaaatcgctccccgaagtggtgtgtcag
acggaggaggaggggaaggaggaagtggagaggaggagggaggagaggaggaaggagaag
aaggagaaaaggaggatcaggaggttgatggaggctgaggccgcggcgtccgcggcggag
acgcagcaggtgggaggggagacgggggcggaagcggagggggaggaagagacttcggaa
gaggccgatcctgctgtcgggtctcaccagccagtcgtggcagaggatagtagtgagcaa
aatatgaacaagatggaagtgaccaaacttggagttgggtccaacagtcctgttgttgca
gagaacaggcagcaagatcacaaagtggaattggctgaaactggtgttgggtccaacaat
cctgtcgtcgcagagcatagggagcaaagtataaagaaggtgtatgttggtggcatccca
tattattcatcagaggatgacataagaagtttctttgaaggatgtggcagtatcactgca
attgactgcatgacctttcctgagagcggaaaattcaggggtattgcaattctcacattt
aagactgatgctgctgcacagagggcattagctatggatggtgcagatatgggaggattt
tatctgaaaatccagccttacaaacataaccgtgagaaggaagattttgcaccaaagttg
atagagggatataataggacatatgttgggaacctaccatgggatataacagaagatgat
ctaaagaagttcttttcagactgcaaaatctcgtccatccgattcggaacagacaaggag
acgggtgatttcaaaggctatgcacacattgactttgctgatggtacctctcttgctgtt
gcattgaagcttgaccagaaggtgattaagggacggccagtcagaatcagatgcgcagtt
cccaaaaaggagaaccaaaaaatcagtgataatgggaactcagatccttcaaagagtaag
attcggacatgctatcaatgtggcacccctgggcacctctcttctgcttgcccaaataag
aaggattctgatgtaaggaaatgctatgaatgtggcacccctgggcacctctcttctgct
tgcccaaataagaagaactctgaagtaatttctggtgaaaacaagggtacagttgactca
gctatagcatcgtcaaacaagaggcgaacatgttatgaatgtggcatcccaggacacctc
tcttcttcttgcccaaataagaagggtgtcgaatttatttctgatgaaaagaatgctaat
gttgactcagccacggcgtcatcaaagaagagacgaacatgctatgaatgtgggactcct
ggccatctctcatcagcttgcccaaacagaaggactgaagactctgttcagaataacagg
gagcctgttgatgatgcaaagtctgcacctaccatcgtgcctgaggaaacgaaaccaggt
gatgaatcaaattcagtaccttcgaagaagaggcggaagtgctatgagtgtggaatttct
ggccatctctcatcagcttgccccaacaaaaaggtcgctgaggttgttgataatgcagtg
gaacgtgatactggctcaaccattgccgaggagaaagccaatggtgacacaaaatctgca
cctgcaaagaaaaagaaaaggcggacatgttatgagtgcggcatcgctggccatctctca
tcagagtgcccgaacaaggcagctgcataa
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