Setaria viridis (green foxtail): 117848734
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Entry
117848734 CDS
T07951
Name
(RefSeq) RNA-binding protein Y14A
KO
K12876
RNA-binding protein 8A
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
svs03015
mRNA surveillance pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117848734
09122 Translation
03013 Nucleocytoplasmic transport
117848734
03015 mRNA surveillance pathway
117848734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117848734
03041 Spliceosome [BR:
svs03041
]
117848734
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117848734
Spliceosome [BR:
svs03041
]
Complex C
Other components
EJC/TREX
117848734
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
RRM_7
Motif
Other DBs
NCBI-GeneID:
117848734
NCBI-ProteinID:
XP_034586148
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All DBs
Position
3:3656905..3660142
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AA seq
203 aa
AA seq
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MAAVTNADVEVVDFDLDDDDLMDEDAGAEPSPAPAPTSRLRSTIAGDDAPRKTKGRGFRD
DPNSSSAPRDSRFGAGGRGDFDSLGSGGGPAPIRSIEGWIVLVTGVHEEAQEDDLHNAFR
EFGQVRNLHLNLDRRTGFVKGYALIEYENFEEAQAAIKELDGTELYAQIISVDWAFSSGP
AKRRNTQKRPPPRYRSRSPRRTH
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtgaccaacgccgacgtggaggtggtcgacttcgacctcgacgacgacgac
ctcatggacgaggacgccggggcggagccctcgccggcccccgcccccacgtcccgcctc
cgctccaccatcgcgggcgacgacgcgccgcgtaagaccaagggccgtggcttccgcgac
gaccccaactcctcgtccgccccccgcgactcgcgcttcggcgctgggggacgcggcgat
ttcgactccctcggctccggcggcggcccggcgcccatccgatcaattgaaggatggatt
gtgctggtcactggagttcacgaagaagcacaagaagatgaccttcacaatgctttccga
gaatttgggcaggtcagaaacctgcatttgaacttggatcgtcgtactggatttgtcaag
gggtatgctttgattgaatatgagaactttgaagaagctcaggctgcaataaaagaactg
gatggaactgagctttatgcccaaataataagtgttgattgggcatttagcagtggtcct
gctaagcgcagaaacactcaaaagagaccaccaccaagatatcgttcaaggtcccccagg
aggacacactga
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