KEGG   Setaria viridis (green foxtail): 117848803
Entry
117848803         CDS       T07951                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
svs  Setaria viridis (green foxtail)
Pathway
svs03018  RNA degradation
svs03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:svs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117848803
  09123 Folding, sorting and degradation
   03018 RNA degradation
    117848803
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:svs03019]
    117848803
   03041 Spliceosome [BR:svs03041]
    117848803
Messenger RNA biogenesis [BR:svs03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     117848803
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     117848803
Spliceosome [BR:svs03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    117848803
SSDB
Motif
Pfam: LSM DUF7452
Other DBs
NCBI-GeneID: 117848803
NCBI-ProteinID: XP_034586238
LinkDB
Position
3:21270523..21272476
AA seq 88 aa
MSQNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEG
RRITKLDQILLNGNNIAILVPGGSPPDV
NT seq 267 nt   +upstreamnt  +downstreamnt
atgtctcagaacaacccctcccagctcctcccctcagagctgatcgaccggtgcattggg
tccaagatctgggtcatcatgaagggggacaaggagctcgtcggaaccctctgcggcttc
gatgtctacgtcaacatggtgctggaggacgtcaccgagtatgaatacacggctgaaggg
cgtcgcattacaaaacttgaccaaatcctcctgaatggcaacaacatagccattttggtt
cctggtggttcaccgcctgatgtgtaa

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