Setaria viridis (green foxtail): 117848803
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Entry
117848803 CDS
T07951
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117848803
09123 Folding, sorting and degradation
03018 RNA degradation
117848803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117848803
03041 Spliceosome [BR:
svs03041
]
117848803
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117848803
mRNA degradation factors
5'-3' decay
Lsm complex
117848803
Spliceosome [BR:
svs03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117848803
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
Motif
Other DBs
NCBI-GeneID:
117848803
NCBI-ProteinID:
XP_034586238
LinkDB
All DBs
Position
3:21270523..21272476
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AA seq
88 aa
AA seq
DB search
MSQNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEG
RRITKLDQILLNGNNIAILVPGGSPPDV
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagaacaacccctcccagctcctcccctcagagctgatcgaccggtgcattggg
tccaagatctgggtcatcatgaagggggacaaggagctcgtcggaaccctctgcggcttc
gatgtctacgtcaacatggtgctggaggacgtcaccgagtatgaatacacggctgaaggg
cgtcgcattacaaaacttgaccaaatcctcctgaatggcaacaacatagccattttggtt
cctggtggttcaccgcctgatgtgtaa
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