Setaria viridis (green foxtail): 117849272
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Entry
117849272 CDS
T07951
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs00040
Pentose and glucuronate interconversions
svs01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117849272
Enzymes [BR:
svs01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
117849272
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Phage_cement
NosD
Motif
Other DBs
NCBI-GeneID:
117849272
NCBI-ProteinID:
XP_034586726
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Position
3:38497758..38499706
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AA seq
393 aa
AA seq
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MAFLIFFCFTASFLPLFISSPLPIHSSTTVSLIFLVLYRSVNTSRYRRMLDGDCGTGNPV
DDCWRCDPSWADNRQRLADCAVGFGRDAAGGKNGRNYVVTDPGDADDPSDPAPGTLRYGL
VQEGPLWITFARDMTIRPKHDLLVGSHKTVDGRGAAVVVGDGGACLVIHNASHVIVHGIT
VRGCKPARTASGGMSDGDGITVFRATDVWVDHCTLENCTDGLIDVTDASTRVTLSNNLLR
NHDKAVLLGHSDDFTDDKDMKVTVAFNRFGPGLVQRMPRCRFGLFHVINNDYISWQIYAI
GGSASPTILSHGNRFLAGEAKEVTKRDGRTAESEWSTWTWISEGDMLLNGAFFRSSGSPG
PDVNTPSFAKSVSLVSAMTDSVGVLSCKEGSLC
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggcctttctcatcttcttctgctttactgcatcctttcttccccttttcatctcttct
ccattgccaatccactcctcaaccacagtgagtttaatcttccttgttctttacagaagc
gtgaacacgtcacgataccgacggatgcttgacggcgactgcggcaccggcaacccggtg
gacgactgctggcgctgcgacccgagctgggccgacaaccggcagcgcctcgccgactgc
gccgtcgggttcggccgcgacgccgccggcggcaagaacggcaggaactacgtggtgacg
gacccgggcgacgccgacgacccgtcggacccggcgccgggcaccctccgctacggcctc
gtccaggaggggcccctgtggatcacgttcgcgcgcgacatgaccatccggcccaagcac
gacctgctggtgggctcccacaagaccgtcgacggccgcggcgccgccgtcgtcgtcggg
gacggcggcgcctgcctcgtgatccacaacgcgagccacgtcatcgtccacgggatcacc
gtgcgcggctgcaagcccgcgcggacggcgagtggcggcatgtcggacggcgacggcatc
accgtcttccgcgccaccgacgtgtgggtcgaccactgcacgcttgagaactgcaccgac
ggcctcatcgacgtcacggacgcatccacacgcgtgaccctgtccaataacctcctgagg
aaccatgacaaggcagtgcttcttgggcacagcgacgatttcactgatgacaaggacatg
aaggtcaccgttgcgtttaaccgtttcggcccaggtcttgtgcagagaatgccaaggtgt
cggttcggactctttcatgtcatcaacaatgactacataagctggcagatatacgccatt
ggtggcagtgcttcaccaacaattctgagccatggcaatcgattcctagcaggcgaggcc
aaagaggtgacgaagcgtgatggaagaacagcagagagtgagtggagtacctggacctgg
atatctgaaggtgatatgttgctcaacggcgcattcttcagatcatctggtagtcccggg
cctgacgttaacacccctagctttgccaaatcggtctccttagtgtcggcgatgactgac
tcggtaggggttctgtcatgcaaggaaggatctctgtgctga
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