Setaria viridis (green foxtail): 117849480
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Entry
117849480 CDS
T07951
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117849480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117849480
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117849480
Spliceosome [BR:
svs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117849480
Complex C
U5 SnRNP specific factors
117849480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_11
NBAS_11th
Motif
Other DBs
NCBI-GeneID:
117849480
NCBI-ProteinID:
XP_034586938
LinkDB
All DBs
Position
1:374279..383143
Genome browser
AA seq
2178 aa
AA seq
DB search
MANLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPETLYGRIDPRSFGDRAV
QNRPPELEEKLTKARTKKTKRDAADPDIPRRDAKRRRRAASTQDVSVLSLTDDVVYKPQT
KETRAAYEALLSVIQQQLGGQPLDVLAGAADEVLATLKNDKIKNPDKKKDIEQLLNPISN
QLFDQLVSIGKLITDFHDAAAGDAAGGPSGDAMDTTLDDDVGVAVEFEESDEDEESDFDQ
VQDDLDEDDEDEATELNGPGGMQMGGELDDDDMQNANQGLAINVQDIDAYWLQRKISQAY
GDGNIDAQQSQKLAEEILKIIAEGDDRDVENRLVMLLDYDKFDLIKLLLRNRLKIVWCTR
LARAEDQEQRTKIEEEMASDPSLAPILEQLHATRASAKERQKNLEKSIRDEAKRLLNNDG
AGADGPRDRRAAERDMESGWLKGQRQLLDLDSLAFHQGGLFMANKKCELPAGSFRTPHKG
YEEVHVPALKAKPYETGEKIVKISDLPEWAQPAFEGMSALNRVQSRVYDTALFKPDNILL
CAPTGAGKTNVAVLTILQQIGLHMKDGEFDNTKYKIVYVAPMKALVAEVVGNLSKRLAPF
NVTVRELSGDQNLTKQQIDETQIIVTTPEKWDIVTRKSGDRTYTQMVKLLIIDEIHLLHD
NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVPKKSIFHFDNSYRPC
PLAQQYIGITVRKPLQRFQLMNEICYEKVMAAAGKHQVLIFVHSRKETAKTAKAIRDTAL
ANDTVSRFLKNESASQEILGTHAELVKNNDLKDLLPYGFAIHHAGMARVDRELVEELFAD
KHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDT
HGEGIILTGHSELQFYLSLMNQQLPIESQFVSQLADQLNAEIVLGTIQNAREACSWLGYT
YLYIRMLRNPALYGLPADIFESDKTLDGRRADLIHSAANLLDRNNLIKYDRKTGYFQVTD
LGRIASYYYISHGTISTYNEYLKPTMGDIELCRLFSLSEEFKYVGVRQDEKMELAKLLDR
VPIPVKESLEEPSAKINVLLQAYISRLKLEGLSLSSDMVYIRQSAGRLLRALFEIVLKRG
WAQLAEKALNLCKMVDKQMWSVQTPLRQFPGIPKEILMKLEKKELAWERYYDLSSQEIGE
LIRYPKMGRQLHKCIHQLPKLNLSAHVQPFTRTVLGFELTITPDFQWDDKIHGYVEPFWV
IVEDNDGEYILHHEYFLLKKQYVDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTILP
VCFRHLILPEKYAPPTELLDLQPLPVSALRNARYEGLYSSFKHFNPIQTQVFTVLYNSDD
SVLVAAPTGSGKTICAEFAILRNHQRAVSGESNMRVVYIAPIEALAKERYRDWERKFGEF
AKVVELTGETAADLKLLDKGEIIISTPEKWDALSRRWKQRKHIQQVSLFIVDELHLLGSD
KGHVLEVIVSRMRRISSHIGSNIRIVALSASLANAKDLGEWIGATSHGLFNFPPAVRPVP
LEIHIQGVDIANFEARMQAMTKPTYTAITQHAKSGKPALVYVPTRKHARLTALDLCAYSS
VEGGGTPFLLGSEEEMDTFTSGVEEETLKNTLKCGVGYLHEGLSELDQELVTQLFLGGRI
QVCVASSTMCWGRPLPAHLVVVMGTQYYDGRENAHTDYPITDLLQMMGHASRPLQDNSGK
CVILCHAPRKEYYKKFLFEAFPVESNLHHFLHDHMNAEVVVGVVENKQDAVDYLTWTFMY
RRLTKNPNYYNLQGVSHRHLSDHLSELIETILNDLESSKCVAIEEDMYLKPLNLGLIASY
YYISYTTIERFSSMLTQKTKMKGLLEILASASEYAELPGRPGEEDFIERLVRHQRFSIEK
PKYGDPHVKANALLQAHFSRHNVVGNLAADQREILLSAHRLLQAMVDVISSNGWLSLALN
TMELSQMVTQGMWDRDSVLLQVPHFTKDLARRCQENEGKPIESIFDLAEMGIDEMRDLLQ
LSNSQLQDIIEFFKRFPNVDMAYEVREGDDISAGDNVTVQVTLERDMTNLPSEVGPVHAP
RFPKPKEEGWWLVIGDSSTNQLLAIKRVALQKRARVKLEFSAPAEAGRKDYMIYLMSDSY
LGCDQEYEFTVDVKDAGD
NT seq
6537 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctcggcggcggcgccgaggcgcacgcgcgcttcaagcagtacgagtaccgc
gccaactccagcctcgtcctcaccaccgactcccgcccccgcgacacccacgagcccacc
ggcgagcccgagacgctctatggccgcatcgaccccaggtccttcggcgaccgcgccgtc
cagaacaggccgcccgagctcgaggagaagctcaccaaggcgcgcaccaagaagaccaag
cgcgacgccgccgaccccgacatcccccgacgcgacgccaagcgcaggcgccgcgccgcc
tccacccaggacgtcagcgtcctctccctcaccgacgacgtcgtctacaagccccagacc
aaggagacgcgcgccgcctacgaggccctgctcagcgtcatccagcagcagctcggcggc
cagccgctcgatgtcctagctggggccgccgacgaggtgctcgccaccctcaagaatgac
aagatcaagaaccctgacaagaagaaggacattgagcagctcctcaaccccatctccaac
cagctctttgaccagctcgtctccattggcaagctcatcaccgacttccacgatgcggca
gctggcgacgctgccggtgggccatctggcgatgccatggacaccaccctggatgatgat
gtcggtgttgctgtcgagtttgaagagtcagatgaagacgaggagagtgattttgatcag
gtgcaagatgacttggatgaggatgatgaggacgaagcaacggagttgaatggtcctgga
ggcatgcagatgggtggcgagttggatgacgatgacatgcagaacgccaaccagggactg
gccatcaatgttcaggacattgatgcttactggctccagaggaagatatcccaagcatat
ggggacgggaacattgacgcccagcagagccagaagcttgcggaggagatcttgaagatc
attgctgagggtgatgacagagatgtcgagaatcgccttgtcatgctcctggactatgac
aagtttgatctcattaagttgctgctgcgcaaccgtctcaagattgtttggtgcacccgc
ttggccagggctgaagatcaggaacagaggaccaagatagaggaagagatggctagtgac
ccgagcttggctccaatattggagcagctacatgcaaccagagcatctgcaaaggagagg
cagaagaacctcgagaaaagcatcagggatgaggccaagaggctcctcaacaatgatggt
gctggcgctgatggtccgagggatcgcagggcagccgagagggatatggagagtggatgg
ttgaaaggacagaggcagctgcttgatcttgacagcctcgcttttcaccagggtggtctc
ttcatggctaacaagaaatgtgaacttcctgctgggtcgtttagaacccctcacaaggga
tacgaggaggttcatgtgccagcattgaaagctaagccatatgaaaccggggagaagatt
gtgaagatatctgacttgccagagtgggcgcagccagcttttgaagggatgtctgcgctg
aacagagttcagagcagggtctatgatactgctcttttcaagccggataatatccttcta
tgtgctccgactggtgctggtaaaacaaacgtggctgttcttacgatccttcaacagatt
ggtctgcatatgaaggatggagagtttgacaataccaagtacaaaattgtctatgtggcc
ccgatgaaggctttggtcgctgaagttgttggaaatctatcaaagcgtttggcacctttc
aatgttactgttagggaactcagcggagaccagaacctgaccaagcaacagattgatgaa
acacagattattgtcacgacacctgagaaatgggatattgtgactaggaaatcaggggac
agaacctatacccaaatggtaaagctgttaatcattgatgagatccatctgctacatgat
aacagagggcctgttctggagagcattgttgccaggactgtcaggcagattgagacgacc
aaggaacatattcgtctggttgggctttctgcgacactaccaaactatgaagatgttgcg
ttatttttgcgtgttcctaaaaagagcattttccatttcgacaacagttaccggccttgc
cctcttgctcagcagtacattgggatcactgtgaggaaaccactacagaggttccagttg
atgaatgagatttgttatgagaaggttatggctgctgctggtaagcatcaagtgcttata
tttgtacactcaaggaaggagacggcgaaaactgccaaagcaatcagagatacagctttg
gctaacgacacagttagccgcttcctgaagaacgagagtgcaagccaagagatccttggc
actcatgcagaacttgtcaaaaacaatgatcttaaagacctcctcccgtatgggtttgct
attcatcatgctgggatggcaagggttgaccgtgaactcgttgaggaactttttgctgat
aagcacatacaggttcttgtgtcgactgccacccttgcatggggtgtcaatttgcctgca
catactgttattataaagggtacccagatttacaacccggaaaaaggtgcttggacagaa
ctaagtccgctggatgttatgcagatgcttggtcgtgcaggaaggcctcagtatgataca
catggagagggaataatcttgactggccacagtgaattgcagttttacctgtctcttatg
aatcagcagctacctattgagagtcagtttgtatctcaattagctgatcaattgaatgca
gagattgttctggggactattcagaatgctcgggaggcatgctcgtggcttggctacact
tacctctatattcggatgctccgcaatccagcattgtatggtttgccagcagacatcttt
gagagtgataaaacacttgatggaaggagagctgacttgatacattctgctgcaaatcta
ctggataggaacaatttgataaagtatgacaggaagacaggatactttcaagttactgac
ctgggaaggattgccagttattactatattagtcatgggactatctcaacatacaatgag
tacctgaagcctacaatgggtgatattgagctgtgtcgactgttttcgctgagtgaagaa
ttcaagtatgttggtgtcaggcaagatgagaaaatggaacttgcgaagcttttggatcgc
gtcccgattcctgtgaaagagagcttggaggaacccagtgcaaagatcaatgttctgctg
caagcatacatttctaggctgaaactggaaggcctttctcttagttctgatatggtctac
attagacagagtgctggccgtcttttacgagcactatttgagattgttttgaagagggga
tgggctcaactagcagagaaggcactgaatctttgcaagatggttgataaacaaatgtgg
agtgttcaaactcccttgcgccaatttcctggaattccaaaggagattttgatgaaactg
gagaagaaggagttggcttgggagaggtactatgatctttcatcacaggaaattggtgaa
cttatccgctatcccaagatggggaggcagctgcacaagtgcatccaccagctaccaaaa
ttgaatctgtcagcccatgtccaaccctttacccgtacagttttgggttttgagctgacc
attacacctgatttccagtgggatgataaaatacatggatatgtggagcccttctgggtt
atagttgaggacaatgatggcgagtacattcttcaccatgaatattttttgcttaagaag
caatatgttgatgaagatcatacattgaacttcacagtgccaatatatgagccacttccc
ccacagtattttattcgtgttgtgtctgataagtggcttggttctcagacaattctccct
gtctgcttcaggcatttaattctaccagaaaaatatgcaccaccaactgaattgcttgat
ctgcagcctcttcctgttagtgcactgagaaatgcacgatatgagggcctctacagttct
ttcaagcatttcaatcccatccagactcaagtattcaccgtcttgtataatagtgatgat
agcgtgttggttgctgcaccaacaggcagtgggaagacaatatgtgctgagtttgctata
ctaaggaaccaccagagggcagtgtctggtgagagcaacatgcgggttgtttatatagct
cccattgaagctcttgcaaaagaaagatacagggactgggagcggaaatttggagaattt
gccaaggtagttgagctcactggtgaaactgcagctgatttgaagcttctggataaaggg
gagatcataatcagtactcctgagaagtgggatgcactgtctcgccggtggaaacagcga
aagcacattcaacaggtcagcttattcatagttgatgaacttcatctacttgggtctgac
aagggacatgttttggaggtcattgtatctaggatgaggcgtatttcaagccatattggt
agtaacatacggatcgtagcactttcagcatcacttgcaaatgctaaagatcttggtgag
tggattggtgccacctctcacggcctctttaacttccctccggcagtgcgacctgtgcca
ttggaaattcacattcaaggtgtggatatagcaaactttgaggcaaggatgcaagcaatg
acaaagcctacatacactgccatcacacagcatgcaaagagtggtaagcctgccctggtg
tatgtaccgacaaggaagcatgcaaggttgactgcattggacttgtgtgcgtactctagt
gttgagggtggtggaacaccatttctccttgggtcagaagaagagatggatactttcacc
agtggcgtcgaagaagagacgcttaagaatacgcttaaatgtggtgtaggctacttgcat
gagggtctaagtgaacttgatcaggaacttgtaacccagctgttccttggtgggaggatt
caagtctgtgttgcaagcagcacaatgtgctggggaagaccattgcctgctcatttggtt
gttgtcatggggactcagtattatgatggccgtgagaatgctcacactgattatccaata
acagatctgctccagatgatgggtcatgccagcaggccacttcaagacaactcagggaaa
tgtgttatattatgtcatgcacctcgcaaagagtactacaagaagttcctttttgaggcc
ttccctgttgagagcaatcttcaccatttcttgcatgatcatatgaatgctgaggtggtg
gttggtgttgtggagaacaagcaagatgctgtagactaccttacatggactttcatgtac
cggcggctgaccaagaatcctaactactataatcttcagggtgtaagtcacaggcatctt
tcagatcatctttcagagttgattgagacaatcctgaatgacctggaatcaagcaagtgt
gtggctatagaggaggacatgtacctgaagcctcttaaccttggccttattgcttcatac
tactatattagctacacaactattgaacgtttcagttctatgctgacccagaagactaag
atgaaaggactcctagagattctagcatctgcatcagaatatgcagaacttccaggtcgt
ccaggtgaggaagatttcattgagaggcttgttcgccaccagagattctctattgagaag
cccaagtatggtgatccacatgtgaaggccaatgctctactgcaagcccatttttcaagg
cacaatgttgttgggaacctggcagctgatcagcgggaaattctcctttctgcccatagg
ttgctccaggcaatggttgatgttatatccagcaatggttggcttagtcttgctcttaat
acaatggagttgagtcaaatggtgacacaaggcatgtgggatcgtgattctgttctgctt
caagttccacacttcacaaaggatttggctcggaggtgccaggaaaatgaagggaagccc
attgagagcatctttgatcttgctgagatgggtattgatgagatgcgggatctgttgcag
ctatcaaactctcagctgcaggatatcattgagttcttcaagcggttccccaatgttgat
atggcctatgaggtccgtgagggtgacgacattagtgccggtgacaatgtgacagtgcag
gtaacgctggagcgtgacatgacgaacctgccgtctgaggttgggccagttcatgcgccg
aggttccccaagcccaaggaagaaggctggtggctggtgattggtgacagctccaccaac
cagttgctggcaatcaagagagtcgcactgcagaagcgggcaagggtgaagcttgagttc
agtgctcctgcagaagctgggagaaaggattacatgatttatttgatgtcagattcttac
ttgggctgcgaccaggagtatgagttcacggttgatgtcaaggatgctggagattga
DBGET
integrated database retrieval system
