Setaria viridis (green foxtail): 117849493
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Entry
117849493 CDS
T07951
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X2
KO
K14962
COMPASS component SWD2
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117849493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117849493
03036 Chromosome and associated proteins [BR:
svs03036
]
117849493
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117849493
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
117849493
COMPASS/SET1 complex (yeast)
117849493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
ANAPC4_WD40
NBCH_WD40
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
PQQ_3
Beta-prop_TEP1_C
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_EML
Beta-prop_RIG_2nd
PQQ_2
Beta-prop_WDR75_1st
Beta-prop_EIPR1
PQQ
Beta-prop_VPS8
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
BBS2_Mid
Motif
Other DBs
NCBI-GeneID:
117849493
NCBI-ProteinID:
XP_034586951
LinkDB
All DBs
Position
3:complement(26311248..26317160)
Genome browser
AA seq
337 aa
AA seq
DB search
MRCSRAWRSDWPSETMVSMEINNEVLKSMKKGLAFQGYNGRISSMDFHSKATNYLVTASD
DESIRLYDTQNALCLKTINSKKYGVELVCFTDNPGIVLYSSKNGWDESLRLLSLNDNRFL
RYFKGHLDRVVCISFCSEKENFLSGSIDRTVLLWDQRAEKSQGLLRVQGRPAVSYDDQGM
VFAVAYGGHIRMFDARKFEKGPFEIFSVGNDDSEAHVIKFSSDGRRILVTTKAGRVHVLD
SFHGSSIASYNVKPVVTNSTLEASFSPDGNHIISGSGDGSVYAWNVRSGKVARWGSTDNE
PPLVRWAPGSLMFVTGSSELSCWVPDLSKLGSFTVTK
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgagatgctcaagagcatggaggtcggactggccttcagagactatggtgagcatggag
atcaacaatgaggtgctcaagagcatgaagaaagggctggccttccaaggctataatggc
agaattagttctatggattttcacagcaaggctacgaactatctcgtgacagccagtgat
gatgaatcaatccgcctatatgacactcaaaatgcattgtgtttgaagactattaatagc
aaaaagtatggggtcgaacttgtttgcttcactgataacccaggcattgtcttatattca
tcgaaaaatggctgggatgaatctctgcgtctactctcactgaatgataaccggtttctt
agatattttaaaggtcaccttgacagggttgtctgcatctcattttgctctgaaaaagaa
aattttctctctggttcaattgatcgcaccgttctcttatgggatcagcgggctgaaaaa
tcacagggcttactgcgtgtgcaagggaggcctgcagtttcatatgatgatcagggcatg
gtatttgcagttgcctatggtggtcacataaggatgtttgatgctcgaaaatttgaaaag
gggccttttgagatattctctgtcggtaatgatgattcagaagcccatgtcataaagttc
agtagtgatggcaggcggattctggtaaccactaaagctgggcgtgttcatgtgctagat
tcattccatggcagcagcattgcatcatacaatgtgaagccagtggtaaccaattcaacg
ctggaggcatcattcagtcctgatggaaaccatatcatatctggctctggtgatggtagt
gtttatgcctggaatgttaggagcggaaaggttgcacgctggggaagcacagataatgaa
ccaccactagtaaggtgggctccaggatccttgatgttcgtgacaggatcttcagaactg
tcctgctgggttccggatctgtccaagctgggatcctttaccgttaccaagtag
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integrated database retrieval system
