KEGG   Setaria viridis (green foxtail): 117849493
Entry
117849493         CDS       T07951                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X2
  KO
K14962  COMPASS component SWD2
Organism
svs  Setaria viridis (green foxtail)
Pathway
svs03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:svs00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    117849493
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:svs03019]
    117849493
   03036 Chromosome and associated proteins [BR:svs03036]
    117849493
Messenger RNA biogenesis [BR:svs03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     117849493
Chromosome and associated proteins [BR:svs03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     117849493
    COMPASS/SET1 complex (yeast)
     117849493
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st Beta-prop_WDR3_1st WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 EIF3I WDR55 ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd NBCH_WD40 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_VPS8 Beta-prop_NUP159_NUP214 Beta-prop_WDR90_POC16_2nd Beta-prop_NOL10_N Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_EML Beta-prop_ACSF4 Beta-prop_RIG_2nd PAC11 Beta-prop_Aladin PQQ_2 CFAP251_N Beta-prop_WDR75_1st Beta-prop_EIPR1 PD40 Beta-prop_WDR35_TULP_N Tricorn_N Beta-prop_SCAP BBS2_Mid DUF4934
Other DBs
NCBI-GeneID: 117849493
NCBI-ProteinID: XP_034586951
LinkDB
Position
3:complement(26311248..26317160)
AA seq 337 aa
MRCSRAWRSDWPSETMVSMEINNEVLKSMKKGLAFQGYNGRISSMDFHSKATNYLVTASD
DESIRLYDTQNALCLKTINSKKYGVELVCFTDNPGIVLYSSKNGWDESLRLLSLNDNRFL
RYFKGHLDRVVCISFCSEKENFLSGSIDRTVLLWDQRAEKSQGLLRVQGRPAVSYDDQGM
VFAVAYGGHIRMFDARKFEKGPFEIFSVGNDDSEAHVIKFSSDGRRILVTTKAGRVHVLD
SFHGSSIASYNVKPVVTNSTLEASFSPDGNHIISGSGDGSVYAWNVRSGKVARWGSTDNE
PPLVRWAPGSLMFVTGSSELSCWVPDLSKLGSFTVTK
NT seq 1014 nt   +upstreamnt  +downstreamnt
atgagatgctcaagagcatggaggtcggactggccttcagagactatggtgagcatggag
atcaacaatgaggtgctcaagagcatgaagaaagggctggccttccaaggctataatggc
agaattagttctatggattttcacagcaaggctacgaactatctcgtgacagccagtgat
gatgaatcaatccgcctatatgacactcaaaatgcattgtgtttgaagactattaatagc
aaaaagtatggggtcgaacttgtttgcttcactgataacccaggcattgtcttatattca
tcgaaaaatggctgggatgaatctctgcgtctactctcactgaatgataaccggtttctt
agatattttaaaggtcaccttgacagggttgtctgcatctcattttgctctgaaaaagaa
aattttctctctggttcaattgatcgcaccgttctcttatgggatcagcgggctgaaaaa
tcacagggcttactgcgtgtgcaagggaggcctgcagtttcatatgatgatcagggcatg
gtatttgcagttgcctatggtggtcacataaggatgtttgatgctcgaaaatttgaaaag
gggccttttgagatattctctgtcggtaatgatgattcagaagcccatgtcataaagttc
agtagtgatggcaggcggattctggtaaccactaaagctgggcgtgttcatgtgctagat
tcattccatggcagcagcattgcatcatacaatgtgaagccagtggtaaccaattcaacg
ctggaggcatcattcagtcctgatggaaaccatatcatatctggctctggtgatggtagt
gtttatgcctggaatgttaggagcggaaaggttgcacgctggggaagcacagataatgaa
ccaccactagtaaggtgggctccaggatccttgatgttcgtgacaggatcttcagaactg
tcctgctgggttccggatctgtccaagctgggatcctttaccgttaccaagtag

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