Setaria viridis (green foxtail): 117849597
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Entry
117849597 CDS
T07951
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117849597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svs03400
]
117849597
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117849597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
Motif
Other DBs
NCBI-GeneID:
117849597
NCBI-ProteinID:
XP_034587093
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All DBs
Position
3:complement(30002729..30012017)
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AA seq
943 aa
AA seq
DB search
MDGDDFTPEGGNLPELKLDARQAQGFISFFKRLPQDPRAVRLFDRRDYYTAHGENATFIA
RTYYHTMSALRQLGSSSDGISSASVSKAMFETIARNILLERTDRTLELYEGSGSSWRLTK
SGTPGNIGSFEDILFANNDMQDSPVIVALFPVFREGQLYVGLSFLDMTNRKLGLAEFPED
SRFTNVESALVALGCKECLLPADCEKSIDLNPLQDAISNCNVLLTEKKKVDFKSRDLAQD
LGRIIRGSVEPVRDLLSQFDYALGALGALLSYAELLADDTNYGSYTIEKYNLNCYMRLDS
AAVRALNITEGKTDMNKNFSLFGLMNRTCTVGMGKRLLNRWLKQPLLDINEINNRLDMVQ
AIVEDPELRQGLRQQLKRISDIDRLTHSLRKKSANLQPVVKLYQSCSRISYVKGVLQQYN
GQFSTLIKTKFLDPLEEWMTENRFGRFASLVETAIDLDQLDNGEYRISPLYSSDLAVLKD
ELSVVEDHINNVHIHTASDLDLSVDKHLKLEKGPFGHVFRISKKEEQKVRKKLTSNYIII
ETRKDGVKFTSPKLKKLGDQYQALLSEYTSCQKKVVDDVVRVSGTFSEVFENFAAVLSEL
DVLQSFADLATSCPVPYVRPDITASDEGDIILQGSRHPCLEAQDGVNFIPNDCTLVRGKS
WFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCNEASVSVRDCIFARVGAGDCQLHGV
STFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFAT
HFHELTALAQRNDDEHQQVSDIGISNYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPEAVIALAKSKASELEDFSTTPTFSDDSIDEVGSKRKRVFSPDDVTRGAARAQLF
LEELAALPIDEMDQSKAMEMAAKLKVDMQKDAAGNPWLQQLLR
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggatggagacgacttcacgccggagggcggcaacctcccggagctcaagctagatgcg
aggcaagcacagggtttcatctccttcttcaagaggctgccgcaggacccccgcgccgtt
cgtctcttcgatcgcagggattattacactgctcatggtgagaatgccacgtttattgca
aggacgtactaccacacaatgtcagccttgcgtcaattaggtagcagctctgatggaatc
tcaagtgctagtgtgagcaaggctatgtttgagaccattgcccgcaacattttattggag
cggactgaccgtacattggagctctatgagggaagtgggtcgagttggaggttaacaaag
tctggaacacctggaaatattggtagttttgaagacattctgtttgcaaataacgacatg
caagattcaccagtcattgttgctttgtttccagttttccgggaaggtcagctgtatgta
gggcttagttttctggatatgaccaacaggaagcttgggttagctgagttccctgaagat
agccgattcacaaatgttgaatcagcacttgttgcattaggttgcaaggagtgtcttctc
ccagcggattgtgaaaaatccattgatttgaacccccttcaagatgccattagtaattgt
aatgttctattgactgaaaaaaagaaggttgacttcaaatccagggatcttgcacaagat
cttggtagaataatcaggggttctgttgaacctgttcgtgacctgctatctcagtttgac
tatgctcttggtgcccttggagctctgttatcttatgccgagttgctagcagatgatact
aactatggaagttacacaattgagaagtacaatctgaactgctacatgagacttgattct
gctgcggtgcgagcattaaacatcacagaagggaaaactgatatgaacaagaacttcagt
ttgtttggtttgatgaacagaacctgtactgttgggatgggaaagagattgcttaacaga
tggctgaaacaacctctattagatataaatgaaatcaataacagattagatatggttcag
gctatcgtagaagatccagagcttcgtcagggactcaggcaacaacttaaaaggatatca
gatattgatcgtctaacacattctctccgaaagaaatcagctaatctgcagcctgttgtt
aagctttaccagtcttgttccagaatctcatacgtcaagggtgttcttcagcaatacaat
ggccaattttccacattgataaagacaaagtttcttgacccattggaagaatggatgaca
gagaatcgatttggtaggtttgcttctcttgttgagacagctattgaccttgatcagctg
gacaatggagagtacagaatatctccattatattcttctgacttagctgtgctgaaggat
gagctttctgttgttgaagatcacataaataatgtgcacattcatacagctagtgatctg
gatctttctgttgataagcatctgaagctagaaaaaggaccatttggacatgtgttcaga
atctcaaagaaagaggagcagaaagtcaggaagaaactcactagcaactacataatcata
gaaactcgtaaagatggtgtgaagttcactagtccgaagctgaaaaagctaggtgatcaa
taccaggcactgcttagtgagtacacaagttgtcagaaaaaggttgttgatgatgtagtg
agggtttcaggcaccttctcagaggtatttgaaaattttgctgcggttctgtcagagttg
gatgttttacaaagttttgctgatttggcaactagttgcccagttccttatgtaaggcca
gacattacagcatcggatgaaggagatattattctacaaggtagcagacatccttgtctg
gaagcacaagatggcgttaactttatacccaatgattgcactctggtaagagggaaaagt
tggtttcagatcatcactgggccaaacatgggaggaaaatccacgtttataagacaggtt
ggtgtaaacgtcctgatggcacaagttggttcatttgttccttgcaatgaagcaagtgtt
agtgtgagagattgtatttttgctcgtgttggtgctggtgattgtcaacttcatggtgta
tcaacctttatgcaagagatgcttgaaacagcatccatcctgaaaggcgcctctgataag
tctcttataattattgatgagctgggacgtggaacttccacatatgatggatttggtctc
gcatgggctatctgtgagcatctagtggaagtgactcgagcacctaccttgtttgcaacc
catttccatgaattaactgcattagcacagagaaatgatgatgagcatcaacaagtttct
gatatcggaatttcaaattatcacgtgggtgctcacatagacccatcaagtcggaagtta
actatgctctacaaggttgaacctggggcatgtgaccaaagttttggtattcacgttgca
gaatttgctaattttccagaagctgttattgctcttgcaaaaagcaaagcatcagagtta
gaagacttttctactacacccaccttttctgatgattcgatagacgaggttgggtcaaag
cgcaagagggtatttagcccagatgacgtgaccagaggggctgctcgggctcagcttttc
ctggaggaactcgcagcattgcctatagatgagatggatcagagcaaggccatggagatg
gctgccaaactgaaagttgacatgcagaaagatgcagctggcaatccttggcttcagcag
ttactgaggtga
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