Setaria viridis (green foxtail): 117849741
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Entry
117849741 CDS
T07951
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
KO
K14962
COMPASS component SWD2
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117849741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117849741
03036 Chromosome and associated proteins [BR:
svs03036
]
117849741
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117849741
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
117849741
COMPASS/SET1 complex (yeast)
117849741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
ANAPC4_WD40
WDR55
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
eIF2A
PQQ_3
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_IFT122_2nd
Motif
Other DBs
NCBI-GeneID:
117849741
NCBI-ProteinID:
XP_034587297
LinkDB
All DBs
Position
3:complement(11423049..11426040)
Genome browser
AA seq
320 aa
AA seq
DB search
MAAAASLSQLDDEIVHGMAIGAVFTDYAGKINCLDFHRKEDLLVTSSEDDSIRLYNITSA
TLLKTTYHRKHGADRVCFTHHPSSILCSSRYNLESAESLRYLSLYDNRCLRYFKGHKDRV
VSLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSVAYDQQGLVFAVAMEGGA
IKLFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTTNNHIYVLDAYGGDKRCG
FSLEPSPNVTNEAAFTPDGQYVISGSGDGTLHAWNINTVQEIACWNSHIGPITALKWAPR
RAMFATASTALTFWIPSQSN
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcgtcgttatcgcagctggacgacgagatcgtccacggcatggccatc
ggcgcggtcttcaccgattatgccgggaagataaactgcctcgacttccaccgcaaggag
gatctcctcgtcacctccagcgaggacgactccatacgcctctacaacatcacaagcgca
acgttattaaagactacatatcataggaaacatggtgctgaccgtgtctgctttactcat
catccgagttctatcttatgctcatcacgatacaatcttgagtctgcagagtcacttcgt
tatctatcattgtatgataaccgttgtttaagatacttcaaagggcacaaagacagggtt
gtttcattatgtatgtcacccgtcaatgatagctttatgtcaggatcacttgatcacagt
gtcagaatatgggatcttcgtgtaaatgcttgtcagggcatactaagactgcgtggcagg
ccttctgttgcatatgatcaacaaggacttgtttttgctgtagcaatggaagggggtgct
attaagttatttgattcccgatcgtatgataagggtccgtttgacactttcttggtcggt
ggagatacagctgaagtttctgacatcaaatttagcaatgacggcaagtctatgcttttg
acaacaactaacaaccacatatatgttctggatgcatatggaggggacaagaggtgtggc
tttagtttagagccatctcccaatgtaacaaatgaagctgctttcactccagatggtcag
tatgttatttcaggatctggtgacggaaccctgcacgcttggaacatcaatacagtacaa
gagattgcttgttggaacagtcatattggccctatcacagctttgaagtgggcccctcgt
cgagcaatgtttgcaactgcatcaactgccctaactttctggattcccagccaatcgaat
tag
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integrated database retrieval system
