Setaria viridis (green foxtail): 117849821
Help
Entry
117849821 CDS
T07951
Name
(RefSeq) protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117849821
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
117849821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_8
TPR_12
TPR_19
TPR_14
TPR_17
TPR_16
TPR_11
TPR_CcmH_CycH
TPR_7
TPR_6
TPR_9
ANAPC3
RPN7
ARM_TT21_2nd
Fis1_TPR_C
TPR_10
ARM_TT21_C
ARM_TT21_5th
HEAT_Nup120
TPR-S
HAT_PRP39_C
Motif
Other DBs
NCBI-GeneID:
117849821
NCBI-ProteinID:
XP_034587409
LinkDB
All DBs
Position
1:19535352..19549759
Genome browser
AA seq
1069 aa
AA seq
DB search
MASVYIPVQGTEEEVRVALDQLPHDASDILDILKAEQAPLHLWLIIAREYFKQGKIEQFR
QILEEGSGPEIDEYYADVKYERIAILNALGAFHTFLGKVERAPQKEAHFKDATQYYNRAS
RIDETEPSTWIGKGQLCVAKGELQMASDSFKIVLDEDGNNFPALLGQASVYFLMGEAEQQ
HKKSLEHYRNALDLYKRALRAYSDCPAAVRLGIAFCRYKLGQVEKARQAFQRVLQLDPQN
VDALVAVAIMDLQTNEAGGIRRGMEKMKIAFEIYPYCTLALNHLANHYFFTGQHFVVEQL
TETALSSSNHGLLKSHAYYNLARSYHSKGDIETAGRYYMASVKEISKPQDFVLPYVGLGQ
IQLKFGDFKSSLTSFEKVLEVHPENCESLKAIGHIHAKSGETEKAIETFKKVTRIDPKDH
QAFVELGELLVESDWAAAMEYLKTARNLLKKAGEDVPVELLNGIGLLHFEKGEFEMAEQS
FKEALGDGLWVSIMDGKVGSSMVNWSGQYKDQSFFHQLEEEGVPLELHSNKVTTLFNYAR
LLEERHDSVRASLFYRFIIFKYPDYIDAYLRLAAIAKQRNNAQLSIELVGDALKIDEKNS
NALSMLGSLELQSDETWLTAKEHFRNAKEATKGDAYSLLQLGNWNYFAANRPEKKAPKFE
ATHREKAMELYQSQVLKQHRSNMFAANGIGILYAEKAKWDVAKELFTQVHEAASGSIFVH
MPDVWINLAHVYFAQGHFQQAVKMYQNCLRKFFYNTDATILLYLARTHYEAEQWQDCRKT
LLRAIHLAPSNYLLRFNVGVSMQKFSASTLQKTKRTVDEVRATVSELQNAIRVFSLLSVA
STYHSHGFDERKIETHVEYCKHLLDAAKVHRDAAEQAEQQNKQKMEVARQIALAEEARRR
AEEQRKFQLERRREEDELKQIKQQEEHFERVKEQWKTSSHTPGKRKDRSKNEDEEGVSEK
RRRRGNKRRKDHKTKMQYGEEGEDEYRDEPEGEDDYANLLRDNDGDNSERAPDHLLAAAG
LEDSDAEDDMGHPQSAIERKRRAWSESEDDEPVQRPAAQASPGTNDLSE
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgtgtacatcccggtgcaggggacagaggaggaggtccgggtggcgctggac
cagctcccccacgacgcctccgacatcctcgacattctcaaggccgagcaggccccgctt
cacctctggctcataatcgcgagagaatacttcaagcaaggaaagatagaacagttccgt
cagattctagaggaaggatctggtcctgaaatcgatgagtattatgccgatgtgaagtat
gaacgaatagcaatccttaatgctttgggtgctttccatactttcttgggaaaggttgag
agagcaccacagaaggaagcacattttaaagatgccactcaatattacaatagagcatca
aggatagatgaaacagaaccttctacgtggattggaaaaggtcaactctgtgtggccaag
ggtgagttgcaaatggcgtctgactcattcaagattgtgttggatgaagatggaaacaat
tttccggctctacttggtcaggcctctgtttactttttgatgggtgaagcagagcagcag
cacaaaaaatccctggagcattataggaacgcactagacctctacaagcgagctctgcga
gcatattctgattgtcctgctgctgtaaggcttggcatagccttttgccgatataaactt
ggacaagtagaaaaagctcggcaagcttttcagagagttttacagctggaccctcaaaat
gttgatgctttagtggcagtagcaatcatggacttgcaaacaaatgaagctggtgggatt
cgcagaggaatggagaaaatgaaaatagcatttgaaatttatccttattgtacattggca
ctcaaccaccttgcgaaccattatttctttactggccaacattttgtggttgaacaattg
actgagactgctctctcttcaagcaatcatggactactgaaatcacatgcttactataac
ttagccagatcataccacagtaagggggacattgagactgctggacgatattacatggca
tctgttaaagaaatcagtaaaccacaagactttgtgttaccatatgttggacttggtcaa
atacaattaaaatttggagacttcaaaagttcactaactagctttgagaaagtgctggag
gtacaccctgaaaattgtgaaagtttgaaggctattgggcacatacatgcaaaatctggt
gaaactgaaaaagctatagaaaccttcaagaaagttacccggattgaccccaaagatcat
caggcatttgtggaacttggtgaattgttggtagaatctgactgggctgctgctatggaa
tacttgaagacggcccgtaatctcctcaagaaggcaggggaggatgttcctgttgagttg
ctcaatggaattggacttcttcattttgagaagggagagtttgagatggctgaacaaagt
tttaaggaagcactaggtgatggtctttgggtttcaattatggatgggaaagtaggtagc
tctatggtcaactggagtggtcagtataaggatcagagtttctttcaccaacttgaagag
gaaggtgtgcctcttgagttacattcaaataaggtcaccacactgtttaattatgcaaga
ttactggaagaacgtcatgattctgtcagagcaagcctcttttaccgtttcattattttc
aagtaccctgactacatagatgcctacctgaggctagcggctattgcgaaacaaagaaac
aatgcccaactgagcattgaactggtaggtgatgctttaaagatagatgagaagaactcg
aatgcgttgtctatgcttggaagtcttgagctccagagtgatgaaacctggcttaccgca
aaggagcatttccgtaatgctaaggaggccaccaagggagatgcctactctttgcttcaa
ttggggaactggaattactttgcagccaatcgccctgagaaaaaggccccgaaatttgag
gctactcatagggagaaagccatggaactctatcagagtcaagtactaaagcagcatcgt
agtaatatgtttgctgcaaatggtattggaatcttatatgctgaaaaagccaaatgggac
gttgctaaggagttgtttacacaggtacatgaagctgcatctggaagtatatttgtacac
atgcctgatgtatggatcaatctggctcatgtatattttgctcaaggtcattttcaacaa
gcagttaaaatgtaccaaaattgcctgcggaagttcttctacaacacagatgcaactatc
cttttataccttgcccgaacacactatgaggctgagcaatggcaagactgcaggaaaact
ttgctgagagctatacatttggctccatcaaattatttgctaaggtttaatgtaggtgtg
tcaatgcagaaattctcagcttctactctgcaaaagacaaaacgaacagttgatgaggtt
cgtgccacagtcagtgaacttcagaatgctattagagtgttcagtctgttgtctgttgca
tctacgtaccattcccatggttttgacgagaggaaaatagaaactcatgttgagtactgc
aaacatttgcttgatgctgctaaggttcaccgtgatgcagctgagcaagctgagcagcaa
aacaagcaaaaaatggaagttgcccgccagattgctttggcagaggaagctcgccgaagg
gcagaagagcagaggaaattccagttagaaaggaggagggaagaggacgagctaaagcaa
ataaagcaacaggaggaacacttcgagcgtgtgaaggaacaatggaaaacatccagccac
acccctggcaagagaaaagatagatccaagaacgaagatgaagagggggtaagtgaaaag
aggaggaggaggggtaataagaggaggaaggatcacaagacaaagatgcagtacggggag
gagggagaagatgaatacagagatgaaccagaaggagaagatgactatgcaaacttgttg
agggataacgacggtgacaattcagagagagctcctgatcaccttcttgctgctgctggt
cttgaggattctgatgctgaagatgacatgggacatcctcaatctgcaatagaacggaag
agacgagcttggtcagaatctgaagatgacgagccagtccagagaccagcagcacaagct
agcccgggcacgaatgatttgagtgaatga
DBGET
integrated database retrieval system
