Setaria viridis (green foxtail): 117849875
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Entry
117849875 CDS
T07951
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117849875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117849875
Enzymes [BR:
svs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
117849875
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
HECT type E3
117849875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
HEAT_EZ
Arm
Adaptin_N
HEAT_2
HEAT
Htt_N-HEAT_1
TrAA12
Motif
Other DBs
NCBI-GeneID:
117849875
NCBI-ProteinID:
XP_034587487
LinkDB
All DBs
Position
3:16291691..16301323
Genome browser
AA seq
1533 aa
AA seq
DB search
MDRCRKRPDSDPEGSGEPEPPADKRPCTAEPSTSAAAAAAPPPRAEQGGSDMDTSSSGHA
GDADADADDGDGDGDGDGDGDGGSSCESDGDGSPRPRGARAGRFHQMVEAVAAEGAGQDA
LVAALTELCKELSFCAEDAGGYFPTEAAARALVRRAGGGADGDGAEAAPDVVLLSVRAIT
YLCDAMPRAADSVVRHGLLPLLCSRLLAIEYLDVAEQCLQAFEKISRRQPTQCLQAGMIT
AVLTYIDFFTASIQRVAVSAVANACKKVPADCSHFVVDSVPTLCNLLQSEDKMVVEKVAA
CLISIVDSFSSSVDLLDQLCHQGIIEKVLPLIHTGGLTALSPSTCSNLIGLLAKLACSSL
VAVKSLFELNVGSTIKGILVTSDLSHGMPYLPLEKQNNQVYEALKLANQLIPSAARDVED
TQIILAKEKIITDEPRFLCQFSRDILPVLIKAVNSGANSYICYGCASIVNNICYFSKPET
LQELLKETNISSFLAGLLSRKDHHVLTSSLKIIEILMQKLPDAYLGSFIKEGVVYAVEAL
LTQEDCSKSTRLLDDMQHSGTQPVIRNKSKCFCYAFDAHRSEAAETRACRIGNDSLFTFA
RHVKSTYFTKEVVSSEIGVTEILQKLKTCCAVLNETADKSSEQDNLQNEEYLSTILSEVM
MELHGGETMTTFEFLESGLVKSLSNYLSNGKYLQAEENMSCSSDHFLAVVKRFQSFARMS
FSRMGQNWSDMLLTLLVRKLQNALTSLDNFPVIMSHNFKPRSNISDIPTRHSTIIPCIRV
RFKKDEDETNLSSYDSIVNVEILSSLHTIEEFLWPKVSTDMNSQKVESPPSGTALESKYA
SDDSQERDSTPQSSPPSEGLMTCGNQNPAVEPCPKEGTSSSGQADKSTTIVSDHALQPKL
VFSLKGKELDRSVTLYQSVLQDQINAGSDIILDMQFWRNVHDIIFRTAANPEANRTAINP
EADSLKGTTAISSENDSTTGFKWQMLPFFSSMLLGKLPCKLDRSNPLYDILFMLHILEGL
NRYSFHLVSDERTHSFAHGKITNLDDLKAVVFSIPHQEFVSAKLTDKLEQQMHDPLVSRS
SCLPLWCTELMSACPFLFSFEARWKYFQLTAFGSLKNHHGHIMDAIVNTVTERGPSHSRK
KFRVDRDDILVSAAKMMKSYAKSNALLEVEYKEEVGTGLGPTMEFYTLISHEFQKSGLGM
WRGELPCEAGTDDAHVSRFVVAPKGLFPRPWSTSADCASFQEVSKQFHLLGQVVAKAIKD
GRILDIPFSKAFYKLILGQELNIYDIQLFDSELAISLMEFQAIACRRKYAESNLTRDCQI
MSDLTYRGCRIEDLAIDFALPGYPDYMLSSGSSSDSLNVENLEEYVHHVVEATVKSGIAR
QMEAFKSGFNEVFPLNKLEVFSEDELERLLCGEQDTWDFGKLVDHIKFDHGYTSSSPPVI
NLLEIVQEFGSHQRRAFLQFITGSPRLPPGGLAALNPKFTVVRKHNSNDADNDLPSVMTC
ANYLKLPPYSSKEKMREKLIYAITEGQGSFHLS
NT seq
4602 nt
NT seq
+upstream
nt +downstream
nt
atggatcgctgccggaagcggcccgactccgaccccgagggctccggggagcccgagccc
cccgccgataagcggccctgcacggcggaaccctcgacctccgcggccgcggccgcggct
cctcccccgcgggcggagcagggcggctcggatatggacacctcgtcgtccggccacgcc
ggcgacgctgatgcagacgcggatgacggggacggcgatggcgatggggatggggacggg
gacggcgggtcgtcgtgcgagtcggatggggacgggagcccgaggccgcgcggcgcgcgg
gccgggaggttccatcagatggtggaggcggtggcggcggagggcgcggggcaggacgcg
ctcgtggcggcgctgacggagctctgcaaggagctctcgttctgcgccgaggacgcgggg
ggctacttccccacggaggcggccgcgcgggcgctggtgcggcgggccggcggtggcgcc
gacggcgatggtgcggaggctgcccccgacgtggttctgctctccgtgcgcgccatcacg
tacctctgcgatgccatgccgcgcgccgcagactctgtcgtccgccacggcctcctcccc
ttgctctgctctcggctccttgccatcgagtaccttgatgtcgctgagcagtgcttgcaa
gcatttgagaagatatcacggaggcagcctacccagtgcttgcaggcaggcatgatcacc
gctgtgctgacatacattgacttcttcactgcaagtattcagagggttgcagtgtcagct
gtcgcaaatgcctgcaaaaaggtccctgcagattgctcccattttgttgtggattcagtc
ccaacactgtgtaatcttctgcaatccgaggacaagatggtagtggagaaggttgcagct
tgcttgataagcatcgtggactcttttagcagttcagttgatcttcttgaccagctctgt
caccagggcatcatagagaaggtcctacctttgatccacactggtggactcacggccctt
agcccatcgacttgcagcaacctgattgggcttcttgccaagctagcctgttcgtcactt
gtggcagtgaagtctctctttgagctgaatgttgggagcacaataaaggggattttggtc
acttcagacctatctcatggcatgccatacttacctttggaaaaacaaaacaatcaggta
tatgaagctctgaaactagcaaaccagttgattccttctgctgcaagagacgttgaagac
acccagatcatacttgcgaaagaaaaaattattacggatgaaccaaggttcctgtgtcag
ttctctagggatattcttcctgtcttgatcaaggcggtgaactctggtgccaattcgtac
atttgctatggctgtgcttcaatagtgaacaacatttgttacttcagtaaaccagaaacg
cttcaagagttgctcaaagaaacgaacatatcaagcttcttggctggtttattgtctaga
aaggatcatcatgtcctgacttcatcactaaagataatcgagattcttatgcaaaagctt
cctgatgcttacctgggatcctttatcaaggaaggtgtagtttatgcagttgaggctctt
cttacacaagaggattgctcaaaatccactcgtctgcttgatgacatgcaacactcaggg
actcaacctgtcataagaaataaatctaaatgtttctgctatgcatttgatgcccacaga
tctgaagctgctgaaacaagggcttgtagaattgggaatgacagtctttttacttttgca
aggcatgtgaagtcaacctactttactaaggaagtagtgagttctgagataggggtaact
gagattttgcagaaactcaaaacttgctgcgcagttttaaacgagaccgcagacaagtca
tcagaacaagataatcttcaaaatgaagaatacttatctaccattttaagtgaggtgatg
atggagcttcatgggggagaaacaatgacaacctttgaattccttgagagcggattagtc
aaatctttatcaaattacctctcgaatggcaagtacctccaggcggaggaaaatatgagt
tgcagctctgaccattttttggctgtggtgaaaagatttcaatcatttgctcggatgtca
ttctcaagaatgggccaaaattggagtgatatgctattgacactgttagtaaggaagcta
cagaatgctcttacttctcttgacaactttccagtgataatgagccacaatttcaagcca
aggagcaatatttctgatatccctacgaggcactcaacaattattccatgtatccgagta
cgattcaagaaagatgaagatgaaactaacttgtcaagctatgatagtattgtgaatgtg
gaaatattatcatccttgcatactattgaggaatttttatggcccaaagttagtacagat
atgaacagtcagaaggttgaatcaccacctagtggcactgctttggaaagcaaatatgct
agtgatgactctcaggaacgagattccacaccacaatcatctcctccatcagagggcctg
atgacttgcggaaatcaaaatccagctgtagaaccatgcccaaaggaaggaacttcatct
tctggtcaagcagataaaagcacaacaattgtgagcgatcacgccttacaaccaaaattg
gtatttagcttaaaagggaaagagcttgaccgatctgttactctgtatcaatcagtcttg
caggatcagatcaatgcagggtctgacataattctggacatgcagttttggcgcaatgta
catgacataattttcagaacagctgctaacccagaggctaatagaacagccattaaccca
gaggcagattctcttaaagggactactgcaatatcttcagaaaatgacagcacaactggg
tttaaatggcagatgctcccattcttttctagtatgttgcttggtaaacttccttgcaaa
cttgacagatcaaatccattatatgacatattgtttatgttacacattttagagggatta
aaccggtattccttccacctcgtctctgatgagagaacccattcttttgcccatggaaag
ataactaaccttgatgatctgaaggcagtagttttctcgattcctcatcaggagtttgtc
agtgccaaactgacagataaactggagcaacaaatgcatgatccattggtttctaggtct
agctgcctgcctttatggtgcactgaactgatgtctgcatgccctttcttgttttcgttt
gaggcaagatggaagtatttccaactaacagcatttggctctttgaaaaaccatcatgga
catattatggatgcaattgttaatactgtgacagaaaggggaccttcccactcgcgtaaa
aagttcagagttgatcgcgatgatatactggtctcagctgctaaaatgatgaagtcgtat
gctaagagcaatgctctacttgaagtagaatataaagaggaagtgggtactggtttaggt
cctacaatggaattctatacattgataagtcatgaatttcagaagtccggtctaggcatg
tggagaggggagcttccttgtgaagctggtactgatgatgctcatgtttctagattcgtg
gttgcgcctaaaggactgtttcctagaccttggtctacttccgcagactgtgcttccttt
caagaagtaagcaaacaattccacctacttggtcaggttgttgcaaaagcaattaaagat
ggcagaattctcgacattccattttctaaagcattctacaagcttatccttggacaggag
cttaatatatatgatatccagttatttgattctgaactggcaatatcccttatggagttt
caagcgattgcttgtcggagaaaatatgcagagtcaaatttgacaagggactgccagatt
atgtctgatttgacttatcgaggttgtagaatagaggatcttgctattgattttgctctc
ccaggatatccagactatatgctctcatcaggaagcagctctgatagtttgaacgttgag
aatttggaagaatatgttcatcatgttgtcgaggcaacggttaaaagtggcattgcaagg
cagatggaagcttttaagtcaggatttaatgaggtatttccactaaacaaactcgaggtt
ttctcagaggatgagctagagcgattactctgtggtgaacaagatacttgggattttggg
aaacttgtggatcacatcaaatttgatcatggttacacttccagcagccctcctgtcatt
aatttgctggaaatcgtccaagagtttggatcccatcaacgcagagctttcttgcaattt
ataacaggttcacctcggcttcccccaggtggcttggccgcactaaatccaaagttcacg
gttgtccgaaagcataacagcaatgatgctgacaatgacctgccgagcgtgatgacctgt
gccaactatcttaagttacctccatactcttcaaaggaaaagatgagggagaaactcatc
tacgcgatcacggaaggccagggttccttccacctatcctaa
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integrated database retrieval system
