Setaria viridis (green foxtail): 117849961
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Entry
117849961 CDS
T07951
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117849961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117849961
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
117849961
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
117849961
NCBI-ProteinID:
XP_034587606
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Position
3:691783..695622
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AA seq
202 aa
AA seq
DB search
MVSSSSPVVNVYPLANYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQE
HNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAV
WWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPRNLKLLAVPLFELYDNVQR
YGPVISTIPQQLSRFQFNMVSS
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atggtgagctcttcgtcgccggtggtcaacgtgtacccgctcgccaactacacgttcggt
accaaggagcccaagatggagaaggacacctccgtcgccgaccgcctcgcccgcatgaag
gtcaactacatgaaagaaggaatgcgcacaagtgtcgaagcaatcctattggttcaagag
cacaaccacccccacatactgctcctgcaaattggaaatacattttgcaaactccctggt
ggacggttgaagcctggagaaaatgaaattgagggtctgaaaagaaagctgtgcagcaaa
cttgcagtgaactcgccctcctttccacctaactggcaggttggagagtgtgttgctgtg
tggtggaggccaaactttgagactgtgatgtatccttactgccctccacatatcaccaag
cccaaggagtgcaagaagcttttcattgttcacctttctgaaagagagtatttcgctgtt
ccgaggaatttgaagctgcttgctgttccactctttgaactctatgacaatgttcagcga
tacgggcctgtcatctccaccatcccacagcagctttctaggttccagttcaacatggtt
agctcttag
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integrated database retrieval system
