Setaria viridis (green foxtail): 117850048
Help
Entry
117850048 CDS
T07951
Name
(RefSeq) uncharacterized protein
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117850048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117850048
Enzymes [BR:
svs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117850048
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
117850048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_RING
Sina_ZnF
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
117850048
NCBI-ProteinID:
XP_034587717
LinkDB
All DBs
Position
3:complement(2304952..2307791)
Genome browser
AA seq
346 aa
AA seq
DB search
MVRLRAGESFKAGEERRWKVHETAGKRATTTRATPGVRKKSKGSGSPDAATPASRERPGR
AAAAAAAAAGDATVEDTDALDCGVCFLPLKPPIFQCDEGHVVCSPCRDKLAPKGRCHVCG
IATHNYHRCHAMERLVESICVPCPNAAHGCGARPAYYDQHVHCQTCPHAPRRCPGKDCSF
LGSTEALLDHFTGAHGWPSTTEIRAFETCSIPLYDGFNFILVEDDEDDDDHFTTTSSSSR
YLLLLNVMRQPLGHSITVHFIGQELRSEGLRCVLSYSRVQYHPDRHKFLGSHSLQSEINV
ECMDLADRLPDPADCFQFIVPDSVLRNIDKKDAMHIEVRVDIINLE
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggtgaggcttcgcgccggcgaatcttttaaggcaggagaggagcggcggtggaaggtc
catgaaactgcggggaagagagcaactacgactcgggcaacccctggcgtccgcaagaag
agcaagggatccggctcccccgatgcggcaacgccggcgtcgcgggagcggccggggaga
gctgcggcagcggcagcggcggcggcgggggacgcgacggtggaggacaccgacgccctc
gactgcggcgtgtgcttcctcccgctcaagccccccatcttccagtgtgacgagggccat
gtggtgtgctcgccgtgccgtgacaagcttgcgccaaagggcaggtgccatgtttgcggc
attgccacgcataactaccacaggtgccacgccatggagcgcctggtggagtccatctgt
gtcccgtgcccgaatgcagcccatggctgtggtgccaggccagcttactacgatcagcat
gtccactgccagacgtgtccacatgcaccacgccgctgcccgggcaaggactgcagcttc
cttggttctacagaggcgctcctggaccacttcaccggcgcacatggatggccttccacc
accgagatcagagcctttgagacatgcagcattcccctctacgatggattcaacttcatc
ctcgttgaggacgatgaggatgacgatgatcatttcaccactaccagcagcagcagtcgg
tacctgttactcctgaacgtgatgcggcagccgcttggccactccatcaccgtgcacttc
atcggtcaagaattgcgctcagaaggactaagatgtgtgctcagctactcacgggtacaa
taccaccctgatcgtcataagttcctgggcagccattctctgcaatctgagatcaatgta
gaatgcatggatctcgccgataggctgcccgaccctgctgattgcttccagttcatagtg
ccggattccgttcttagaaacatcgacaagaaggatgctatgcacatcgaagtccgtgtc
gacatcatcaatctggagtag
DBGET
integrated database retrieval system
