Setaria viridis (green foxtail): 117850126
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Entry
117850126 CDS
T07951
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117850126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117850126
04121 Ubiquitin system [BR:
svs04121
]
117850126
03036 Chromosome and associated proteins [BR:
svs03036
]
117850126
03400 DNA repair and recombination proteins [BR:
svs03400
]
117850126
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
117850126
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
117850126
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
117850126
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
117850126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-HC5HC2H_2
BRCT_2
PTCB-BRCT
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
117850126
NCBI-ProteinID:
XP_034587812
LinkDB
All DBs
Position
3:14783357..14788302
Genome browser
AA seq
680 aa
AA seq
DB search
MPATHVSVMVKTFGEMDSGTVDVLNRGQMQSQVFKRGQMRSNVLKRRQMQSDELTRQFNS
ITKPSLAGATKASLLKRNKTGPNQLSYRESNVSTKHVLSKDIGGTTELKRLQTPINLFED
ECIFCHSFRTDEEIHGPMVYYVKGRLVSIEEGNLSKAIYVHKKCLMWAPEVCWDFESNIV
ENLESEIRRASRLRCARCGLQGAALGCYYKHCRKSFHIPCAVQIIDCRWDVDKRNVLCPK
HVSKTLPCDKLSTHTKENDHSSSLCQSQCSQEDYLFTDFEEEGQQSDQLKTTCSFLPVGQ
CTDKEGKIDDHHREKQQTDQLNTSNASSLPQSTYIDKEADNHQRKNQQTDHFKILNPSCL
PQNQSSQKEGTSTNSSRDGQQIDQLDSSGSSSLQLGQHSDEEGISKNHERDDQRTHKRNT
SNFPSLPKSCHPYEEGISNVYKREEIKAYRADTSSCPSDQLVLLGLSLSASEKDSLQEFV
RWSNGKLMKEWDKNVTHVIVGKGPGSSWNRSFEVLMAVLLGKWVIHFEWIMDCSSEMRPR
PEASYEVTSSMDSLKTMDGPKKGRIRAATGAPNLFSGLRFRLSAYMNPDGRHRVRDLIAA
AGGKVLEGGFLDPPLECFDGSSSVKPYFVFDGDVPGEFALGTLLKEVEEARKHAAAGARV
ISHQRVLDAVAAYDAEILNR
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctactcatgtcagcgtaatggtcaagacattcggagaaatggatagtggtact
gttgatgtccttaatcgaggccaaatgcagagccaagtctttaagcgaggtcaaatgcgg
agcaatgtccttaagcgacgtcaaatgcagagcgacgaattgaccagacaatttaactct
ataactaaacccagccttgctggggcaacaaaggcatcgctgttgaagcgaaataagaca
gggccaaatcagctttcgtatagagaaagcaatgtatctacaaaacatgtcttgtccaaa
gacattggaggtactactgaattgaagagactgcaaactccaatcaacttatttgaagat
gaatgcattttttgccattcgtttagaacggatgaggagattcatggtccgatggtatat
tatgtaaagggaagacttgtgtccattgaagagggcaacttatcaaaggccatctacgtc
cataagaaatgcctgatgtgggctcctgaagtatgctgggactttgagtctaacattgtt
gagaacttggagtcagaaattaggcgtgcttcaagactgagatgtgcaagatgtggactc
cagggagcagcccttggttgttattataaacattgcagaaagagttttcacattccatgt
gcagttcagataattgattgccgctgggatgttgataaacgtaatgtgctgtgccctaaa
catgtttcaaagacactaccatgtgataagctgagtacacatacaaaggagaatgaccat
tcttcttccttgtgtcaaagccaatgttcacaagaagattatcttttcactgatttcgaa
gaggaaggccaacaatctgatcagcttaaaaccacatgttcattcttgcctgtgggccaa
tgtacagacaaggaagggaaaattgatgatcatcatagggaaaaacaacaaacagatcag
cttaacacttcaaatgcttcatcgttgcctcagagcacatatatagacaaggaagctgac
aatcatcaaaggaaaaatcaacaaacagatcattttaagattttgaatccttcctgcttg
cctcagaaccaaagttctcaaaaagaaggaacttccaccaatagctcaagggatggccaa
caaatagatcagcttgacagctcaggttcctcttccttgcaattgggtcagcattcagac
gaggaaggaatttctaagaatcatgaaagggatgatcaacgaacgcataagcgtaacacc
tcaaattttccctccttgcctaagagctgtcatccatatgaagaaggaatttccaatgtt
tacaaaagggaagaaataaaagcatatcgggctgacacatcaagctgcccttctgatcag
ttggttttgcttggtttgtctttaagcgcgtcagagaaggattccttgcaggagtttgta
cgttggtccaacgggaagctgatgaaagagtgggacaaaaatgtgactcatgtcattgtg
ggcaaaggtcctggtagctcatggaacagatcatttgaagtcctcatggcagtactgctg
gggaaatgggttatccattttgaatggatcatggactgctcctcagagatgcgtccacgt
ccagaagcttcttatgaggtaacatccagcatggattcactcaaaacaatggacgggccg
aagaagggaagaatccgagcagccacaggggcaccgaatctgttctcgggactgcgcttc
cgcctcagcgcctacatgaaccctgacggcaggcaccgcgtgcgagacctcatcgcagcc
gccggagggaaggtcctggagggaggatttctggacccgccactcgaatgctttgacggc
tcttcttcggtgaagccgtacttcgtcttcgacggcgacgttcctggagaatttgccctg
ggcacgctgctgaaggaggtggaggaggcgaggaagcacgcggctgcgggtgcgcgggtg
atcagccaccagagggtgctggatgccgtcgcggcatacgacgccgagatcctcaaccgc
tga
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