KEGG   Setaria viridis (green foxtail): 117850250
Entry
117850250         CDS       T07951                                 
Name
(RefSeq) protein RAE1
  KO
K14298  mRNA export factor
Organism
svs  Setaria viridis (green foxtail)
Pathway
svs03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:svs00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    117850250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:svs03019]
    117850250
   03036 Chromosome and associated proteins [BR:svs03036]
    117850250
Messenger RNA biogenesis [BR:svs03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     117850250
Chromosome and associated proteins [BR:svs03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    117850250
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR3_2nd WDR55 WD40_Gbeta Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_EML EIF3I Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_ACSF4 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF12 WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_EIPR1 WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_WDR41 Beta-prop_RSE1_2nd
Other DBs
NCBI-GeneID: 117850250
NCBI-ProteinID: XP_034587954
LinkDB
Position
3:9882348..9889235
AA seq 343 aa
MASLTGLAANPNPNKSFEILPNPGDSVSSLSFSPKSNLLVATSWDNQVRCWEIVGGNSQP
KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPQTVAMHDAPVKEIAWIPQ
MNLLVSGSWDKTLRYWDTRQANPVHIQQLPERCYALTVNYPLMIVGTADRNLVVFNLQNP
QTEFKRIQSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHIDDSQQSKNFTFKCHREGND
IFSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAFSRCPLPIPCSTFNSDGSIFAY
AVCYDWSRGAENHNPAAAKTSIYLHSPQESEVKGKPRIATGRK
NT seq 1032 nt   +upstreamnt  +downstreamnt
atggctagtctaaccggcctcgccgcgaaccctaatccgaacaagtcattcgagatcctg
cccaacccgggtgactcagtctcgagcctcagcttcagccccaagagcaacctgctggtg
gcaacctcctgggataaccaggtgaggtgctgggagattgttggcgggaacagtcagccg
aaggcgtccatatcgcatgatcagccggtcctctgctccgcttggaaggatgatggaact
actgtcttctctggaggttgtgacaagcaggtcaaaatgtggcctctgctgtcaggtggt
cagcctcagacggttgcgatgcatgatgcgcccgtcaaggagatcgcatggattcctcag
atgaatcttcttgtctctggaagctgggataagactctaaggtactgggacacaagacaa
gcaaatcctgtgcatatccagcaacttccagagcgttgctatgctcttacagtgaattac
ccccttatgattgtgggaactgctgatcgtaaccttgtagtcttcaacttgcagaatcct
cagacggagttcaagcgtattcagtcaccactaaaataccagacacggtgccttgctgca
ttccctgatcaacaaggatttctggttggttcgatagaaggaagagttggtgttcatcat
atcgatgattcacaacaaagcaagaatttcactttcaaatgtcacagggaaggaaatgat
atattctctgtcaattcactgaacttccatcctgtccatcacacatttgcaactgctgga
tctgatggtgctttcaacttctgggataaggacagcaagcagaggctgaaggcttttagt
agatgcccacttcccattccttgcagcaccttcaacagcgatggttccatatttgcttat
gcggtctgctatgattggagccgtggggccgaaaaccacaaccctgcagctgcaaagaca
tccatctacctccacagtccacaggaatctgaggtcaaaggaaagccgcggatcgcgaca
ggccggaagtga

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