Setaria viridis (green foxtail): 117850527
Help
Entry
117850527 CDS
T07951
Name
(RefSeq) farnesyl pyrophosphate synthase-like isoform X1
KO
K00787
farnesyl diphosphate synthase [EC:
2.5.1.1
2.5.1.10
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs00900
Terpenoid backbone biosynthesis
svs01100
Metabolic pathways
svs01110
Biosynthesis of secondary metabolites
Module
svs_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
117850527
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
svs01006
]
117850527
Enzymes [BR:
svs01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
117850527
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
117850527
Prenyltransferases [BR:
svs01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
117850527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Cap4_nuclease
Motif
Other DBs
NCBI-GeneID:
117850527
NCBI-ProteinID:
XP_034588262
LinkDB
All DBs
Position
3:complement(1508796..1512499)
Genome browser
AA seq
307 aa
AA seq
DB search
MQMIDYNVPGGKLNRGLSVIDSYLLLKQGSEVTEDEFFLACVLGWCVEWFQACALLLDDI
MDGSHTRRDQICWFRRPEVGLRGINDGILLKCHITRLIKKYFREKTYYIDISELWNEIAL
QTSLGQMLDLISTHNGADELAKYNIEGYRRIVKYKTSYYSFYLPVACALLLSGAKLENFS
ELRDILIEMGIYFQAQDDYLDCFANPNTIGKIGTDIEDHKCSWLIVQALGHANINQIEVL
LKNYGKKDSTSVSKVKSTYSTLDLKDMFSEFEDRAYNHLVTSIEAQHDRAVQEILKSFLK
KIHRRKR
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgcagatgatcgactacaatgtaccaggagggaaactgaatcgaggcctgtcagtgatt
gatagttacttgttgttgaaacaagggagtgaggttactgaagatgaatttttccttgct
tgcgtccttggttggtgtgttgaatggtttcaagcatgtgcactgctgcttgatgatatc
atggatggttcacatacgaggagagatcagatttgctggttccgacgacctgaggttggt
cttcgaggtataaatgatggtattctacttaaatgccacattacacgtttgatcaaaaag
tactttagagaaaaaacttactatattgatatctctgaattatggaacgagatagctctg
cagacatctttaggacagatgcttgatcttattagcacacataatggggcagatgaactt
gcaaaatacaatatagaagggtaccgtcgtattgtcaagtacaagacatcttactattcc
ttttatctccctgttgcttgtgcattgctgttgtctggtgcaaaattggaaaacttcagt
gagctaagggatatactcattgaaatgggtatatattttcaagcacaggacgattacttg
gattgtttcgctaatcctaataccataggcaagattgggactgacattgaggatcacaag
tgttcctggttaattgtgcaagctcttggccatgccaatattaaccagatagaagtatta
cttaaaaactatgggaagaaggattcaacctctgtttccaaagtgaaaagtacttactcg
actcttgatttaaaggacatgttctccgagtttgaagatcgagcatacaatcacttggtc
acatctatcgaagcccagcatgaccgtgctgtgcaggagatcctgaaatcgtttctgaag
aaaatccacagaaggaaaaggtag
DBGET
integrated database retrieval system