Setaria viridis (green foxtail): 117850646
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Entry
117850646 CDS
T07951
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117850646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117850646
Enzymes [BR:
svs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117850646
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117850646
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117850646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
117850646
NCBI-ProteinID:
XP_034588395
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Position
3:21260248..21264768
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AA seq
397 aa
AA seq
DB search
MLKPQTSWTASLPLFLLRRCSRSAPNPFPPGGRRLPCLPVCKRRMSTQAQPRFAPLPTEQ
SESQADAGAAGYQFRLVSYNILAQVYVKSAFFPHSPSACLKWKSRSKAVLTELKSFDADL
MCIQELDEYDTFYKKNMEASGYSSIYIQRSGDKRDGCGIFYKPKSAELVQKEAIHYNDLV
EKYVHSDHVNSAPPNNSSPEEDTNAKQDNSKRGDLNDPRVRLKRDCVGLLAAFKLSDPYD
HILIVANTHIYWDPEWIDVKLAQAKYLLSRVSQFEQLISNKFNSKPSVIIAGDFNSTPGD
KVYNYLVSANLESTDEAPIKLRSLYAVNGGEPEFTNYTPGFTGTLDYIFLSDGSSINPTS
LLCLPRGDSTDVQGGLPNFQHPSDHLPIGADFLVVNS
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaaccccagacgtcgtggacagcttccctccctctcttcctcctccgccgctgc
tcgagatccgcgcccaacccctttcctcccggcggccgccggcttccctgtctcccggtt
tgcaagcggcggatgagcacgcaggcgcagcccaggttcgctcccctccccacggagcaa
tctgaatcccaagccgatgccggggctgcagggtatcagttccggctggtctcctacaac
atcttggcccaggtttatgttaagagtgcgtttttcccgcattcgccatcagcgtgcctc
aagtggaaatctcgatccaaagctgttctaacagagctcaagagtttcgatgctgacctc
atgtgcatacaggagttggatgagtatgataccttctacaagaaaaatatggaagcttct
ggatattcaagtatttacattcagcgatctggagacaaacgggatggttgtggtatattc
tataaaccaaaaagtgcggaactggtgcagaaagaagcaatacattacaatgacttagtg
gaaaaatacgttcatagtgatcatgtaaatagtgccccgccaaataattcttcaccagaa
gaagacacgaatgcaaagcaagataatagcaagcgtggagatctaaatgatccacgcgta
agattgaagcgtgactgtgttggtttactcgcagctttcaagcttagtgatccttatgat
cacattttaatcgtggcaaatacacatatttattgggacccagaatggattgatgtgaag
ttggctcaggcaaaatatcttctttcgagagtctctcaatttgagcaactcatctcaaat
aaatttaattctaagccctcagtgatcattgctggtgatttcaattcgaccccaggtgac
aaggtatacaattaccttgtatcagccaacttagaatctacagatgaagctccgatcaag
ttacgcagcctttatgctgtgaatggaggggagccagagttcacaaactacactcctggt
tttactggaacattggactacatattcttgtcggacggtagttcaataaatcctactagc
ctactttgtttgccgcgaggggattctacggatgtgcaaggaggcctgcccaactttcag
catcctagtgaccatttaccaattggtgctgattttcttgtagttaacagctag
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