KEGG   Setaria viridis (green foxtail): 117851296
Entry
117851296         CDS       T07951                                 
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
svs  Setaria viridis (green foxtail)
Pathway
svs03082  ATP-dependent chromatin remodeling
svs03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:svs00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    117851296
   03083 Polycomb repressive complex
    117851296
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:svs03036]
    117851296
Enzymes [BR:svs01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     117851296
Chromosome and associated proteins [BR:svs03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     117851296
   HDAC complexes
    Sin3A-HDAC complex
     117851296
    BRAF-HDAC complex
     117851296
    REST complex
     117851296
    SHIP complex
     117851296
    MiDAC complex
     117851296
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     117851296
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    117851296
  Chromatin remodeling factors
   NuRD complex
    117851296
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 117851296
NCBI-ProteinID: XP_034588980
LinkDB
Position
4:34976133..34981068
AA seq 518 aa
MDASAGGGGNSLPTTGADGSKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLGRYGL
LDQMQVLRPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLY
SFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHQ
RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDVGHSKGKYYSLNVPL
DDGIDDESYQSLFKPIMGKVMEVFNPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRFM
RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPPNEYYEYFGPDYTLHVAPS
NMENKNTRHQLDDIRSKLLDNLSKLRHAPSVQFQERPPEAELPEQDEDKENPDERRDADS
DVEMNDAKPLEDSGRRSNIQGVRMKKEPAETEATDLDVNSVAAEHSRGNGPVADGVGSSK
QTLPNDASPMAVDEPGAQKVETESSNKLQDQPTMQQKP
NT seq 1557 nt   +upstreamnt  +downstreamnt
atggacgcgtcggccggcggcggcgggaactccctgccgaccaccggcgcggacggctcg
aagcgccgcgtctgctacttctacgacgcggaggtgggcaactactactacgggcagggg
cacccgatgaagccgcaccgcatccgcatgacccacgcgctgctcggccgctacggcctc
ctcgaccagatgcaggtgctccgcccccaccccgcccgcgaccgcgacctctgccgcttc
cacgccgacgactacgtcgccttcctccgctccgtcacccccgagacgcagcaggaccag
atccgcgcgctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacgggctctac
agcttctgccagacctacgcggggggatccgtcggcggcgctgtcaagctcaaccacggc
cacgacatcgccatcaactgggccggcggcctccaccacgccaagaagtgcgaggcctcc
gggttctgctatgtcaatgacatcgtcctcgccatcctcgagctcctcaagtatcatcag
cgcgttctgtacgtcgatattgatatccaccacggggatggcgtggaggaggcattttac
accacggaccgggtgatgacagtatcgttccacaaatttggggattatttccctgggacg
ggggacattcgtgatgttgggcactcgaaggggaagtattactccctcaatgtcccattg
gatgatggtattgatgacgagagctaccagtcattattcaagccgattatgggcaaggtg
atggaggttttcaaccctggtgcggttgtgcttcagtgtggtgcggattccttgtcggga
gacaggttgggctgtttcaacctatctattaaggggcacgcggagtgcgtgagattcatg
aggtccttcaatgtcccactgttgttgcttggtggtggtgggtacaccataagaaatgtt
gcacgctgttggtgctacgagacaggagttgcgcttggtcatgagctcactgacaagatg
ccccctaatgagtattatgagtattttggtccagattacactctacatgttgctccaagt
aatatggagaacaaaaacacacggcatcaattggatgatataagatcaaaacttcttgat
aatctatcaaaactccgacatgctcctagtgtccaatttcaagaacgacctccagaggcc
gagttaccagagcaagatgaagataaagagaaccctgatgaaagacgtgatgctgattct
gatgtggaaatgaatgatgccaagcctttggaggactctggaaggaggagcaacatacaa
ggtgtaagaatgaagaaagaacctgctgagacagaggcaactgacctggatgttaatagt
gtagctgcagaacattcaagaggaaatggacctgttgctgatggagttggttcctcaaaa
caaaccctgcctaatgatgcaagtccaatggccgtagacgaaccaggtgctcagaaagtt
gaaacagagagctcaaacaaattgcaggaccaaccaacgatgcaacagaagccataa

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