Setaria viridis (green foxtail): 117851303
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Entry
117851303 CDS
T07951
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs00040
Pentose and glucuronate interconversions
svs01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117851303
Enzymes [BR:
svs01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
117851303
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
117851303
NCBI-ProteinID:
XP_034588990
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Position
4:complement(2272008..2273710)
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AA seq
439 aa
AA seq
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MAALIIRSPLLSILFYYVLATAVAAAAAAAASSNVTSDEEYWAERAEEARANNRAAYVSD
PIAAMNRFNTETLRATTRRSLRRYQGPCAATNPIDSCWRCRADWATDRQRLALCARGFGH
KTTGGAGGKIYIVTDASDDEMIIPRKGTLRYGVIQGRPLWIVFARDMVVRLRQELIVSDN
KTIDGRGAQVHITGAQITLQSVSHVIIHNVHIHHSAPHSGGIIRDSKRHYGLRTRSDGDG
ISVLSSSNVWIDHVSMYRCSDGLIDVVNGSTGITVSNSHFTKHDHVMLFGASNDNPQDRM
MQVTVAFNHFGKGLVQRMPRCRYGFFHVVNNDYTHWQMYAIGGNKNPTIISQGNRFIAPD
DPNAKEVTKREYTPYSEYKDWVWKSQGDVMMNGAFFNESGGQNERKYDQLDFIPARHGSY
VGELTKFAGTLNCRAGKPC
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcggccctaataatcaggagcccccttctgtccattctcttctattacgtcctcgcc
acggccgtcgcggcggcggcggcggcggcggcgtcgtcgaacgtcacctccgacgaggag
tactgggcggagcgggcggaggaggcccgggcgaacaaccgcgccgcctacgtcagcgac
cccatcgccgccatgaaccgcttcaacacggagacgctccgggccacgacgcggcggtcg
ctgcggaggtaccagggcccgtgcgcggcgacgaaccccatcgacagctgctggcggtgc
cgcgccgactgggccaccgaccggcagcggctggcgctgtgcgcgcgcgggttcgggcac
aagaccaccggcggcgccggcggcaagatctacatcgtcacggacgcgagcgacgacgag
atgatcatcccccggaagggcaccctccggtacggcgtgatccagggccggccgctgtgg
atcgtgttcgcgcgcgacatggtggtgcggctccgtcaggagctcatcgtgagcgacaac
aagaccatcgacggccgcggcgcgcaggtccacatcaccggcgcgcagatcacgctgcag
agcgtgtcgcacgtgatcatccacaacgtgcacatccaccactcggcgccgcactcgggg
ggcattatccgggactcgaagcgccactacgggctgcgtacccggagcgacggcgacggc
atctccgtgctctcgtccagcaacgtctggatcgaccacgtgtccatgtaccggtgctcc
gacgggctcatcgacgtcgtcaacgggtccacggggatcaccgtctccaacagccacttc
accaagcacgaccacgtgatgctgttcggggccagcaacgacaacccgcaggacaggatg
atgcaggtcaccgtcgccttcaaccacttcggcaaggggctcgtgcagcggatgccgcgc
tgccgctacggattcttccacgtcgtgaacaacgactacacgcactggcagatgtacgcc
atcggcggcaacaagaaccccaccatcatcagccaggggaaccggttcatcgcccccgac
gaccccaacgccaaggaggtgaccaagagggagtacacgccctacagcgagtacaaggat
tgggtgtggaagtcgcagggggacgtcatgatgaacggggccttcttcaacgagtccggc
ggacagaacgagcgcaagtacgaccagctcgacttcatcccggcaaggcacggaagctac
gtcggcgagctcaccaagttcgccggcacgctcaactgccgcgccggcaagccgtgctag
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