Setaria viridis (green foxtail): 117851526
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Entry
117851526 CDS
T07951
Name
(RefSeq) uncharacterized protein
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117851526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117851526
Spliceosome [BR:
svs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
117851526
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
Cu-oxidase_4
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
117851526
NCBI-ProteinID:
XP_034589245
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Position
4:complement(37301697..37306453)
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AA seq
548 aa
AA seq
DB search
MGADEQPSPTRKRDREEEELADGGAAEKRARAEGDSLLGLASYEDDDEEEVARGQANGRG
ADGDAEEGEDDDDEEDDVRRAPERRPRQVELRRDCPYLDTVNRQVLDFDFEKFCSISLSN
LNVYACLVCGKYFQGRGLKSHAYTHSLEAGHHVFINLQTERAYCLPDGYEINDPSLEDIR
HVLNPRFTREQVLNLDKNKQWSRALDGSNYLPGMVGLNNIKETDFVNVTIQSLMRVTPLR
NFFLIPENYQHSKSPLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASNKRFQIGVQS
DPVEFMSWLLNTLHAKLKSSKKKNRSIIHDCFQGELEVVKEVHRKHIMEKTEDGDELNGD
ASSVVGTDGIVTETSKVPFLMLGLDLPPPPLFKDAMEKNIIPQVPLFNILKKFDGETVTE
VVRPSIARMRYRVTRLPKYLILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPKPK
ENHKIRSKYDLIANIVHDGKPGEGCYRVFVQRKSEEAWYEMQDLHVTETLPQMVALSEAY
MQIYEQHE
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcggacgagcaaccatccccgacgcgcaaacgcgaccgcgaggaggaggagctc
gccgacgggggcgccgccgagaagcgcgcgcgcgcggagggcgattcgctgctggggctc
gcgagctacgaggatgacgacgaggaggaagtggccaggggccaggcaaatggtcgtggc
gcagacggggacgcggaggagggcgaggacgatgacgatgaggaggacgatgtgaggagg
gctccggagaggaggccgaggcaggtggagctgcgccgtgactgcccttacctcgacacg
gtgaacagacaggtccttgattttgattttgagaagttctgttcaatctccctgtcgaat
ttgaatgtgtacgcgtgcttggtctgtggaaagtatttccaaggaagaggcttgaaatct
catgcatatactcacagtcttgaagcaggccatcatgtgttcattaatcttcaaaccgag
agggcttactgtcttcctgatggatatgagataaatgatccatcattagaagatattcgg
catgttctcaacccaaggttcacgagagagcaggttctaaatcttgacaagaacaagcag
tggtctagagcacttgatggctccaattatctgcctggaatggttggtcttaacaacatc
aaggagactgattttgtgaatgtcacaatacagtcattaatgagagttactcctcttaga
aatttctttctaatacctgaaaattatcagcatagcaaatcaccattggtccatcgtttt
ggggaattgacacgcaagatttggcatgctaggaacttcaagggccaggttagccctcat
gagtttctgcaagcagttatgaaagcgagtaacaagcgctttcagatcggtgtacagtca
gatcctgtggaatttatgtcatggcttttgaatacactgcatgcgaaactaaaaagctca
aagaagaaaaacagaagcataatacatgattgctttcagggagaacttgaagttgttaaa
gaggttcacaggaagcatataatggaaaaaacggaggatggtgatgagttgaatggtgat
gcaagttcagtggttggaacagatggtattgtcactgaaacatctaaggtgccattcttg
atgctcggtcttgacctaccacctccacctcttttcaaagacgccatggagaaaaatatc
atcccacaggtaccattgtttaacatactgaagaagtttgatggtgagactgtgacagag
gttgtccgtccatccattgctcggatgaggtaccgagtcactagactaccaaagtatctg
atccttcacatgcgacggtttaccaaaaataacttcttcgttgagaaaaaccctactcta
gtaaattttcctgtgaagaacttggaattgaaggattacattccattacccaagcctaaa
gagaatcataagatacgttcgaagtatgaccttatagcgaacattgtccatgacggcaag
ccaggcgaaggatgctacagagtatttgttcagcggaaatcagaagaggcctggtatgag
atgcaggatctccatgttactgagactctccctcagatggtagctctttcagaagcctac
atgcaaatatatgagcagcatgaatga
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