Setaria viridis (green foxtail): 117851713
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Entry
117851713 CDS
T07951
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117851713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117851713
Spliceosome [BR:
svs03041
]
Complex B
Other components
Prp19-related factors
117851713
Complex C
117851713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_12
zf-CCCH_2
zf-CCCH
zf-CCCH_3
RRM_occluded
RRM_YTH1
zf-CCCH_10
RRM_3
zf-CCCH_4
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
117851713
NCBI-ProteinID:
XP_034589478
LinkDB
All DBs
Position
4:4343220..4346938
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AA seq
493 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE
EHDRRARAGIDYDSSYGKAQPNDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVAMKLLSKAGEMPSLTPPDDETIRTLYIGGLDSRVT
EQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGK
PQAPKPEEDESGRQGQVSHGGLLPRAVISQQQSGDQPQPPGMEGQQQPPASYYFNIPAPP
AAERTLYPSMDPQRMGAVVKSQDGEGKPGLQPGHAQPSSSSAQGGYPAPPPYYHGQYPPY
YAPPPYVGYMPPPRMPYPPLYPPYQPMLAPTAQAHASSSQQPAQAGQQPPHGPPAQQQQP
APGPSAQQQPTQN
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaccggctgctgcgggacgcgcaggcggacgggtgggagcggtcggacttcccc
atcatctgcgagtcatgcctcggggacaacccctacgtccggatgttaagggcagaatat
gacaaggagtgcaaaatatgtgcacgtccatttactgtcttccgatggcgacctggtcgg
gatgcaaggtacaagaagacagagatctgccagacatgttgcaagctgaaaaatgtctgc
caggtctgcctgctggatcttgaatatggtctaccagttcaggtcagggatacagcgctc
gctatcaattcgaatgatgcaattccaaggagtgatgtcaatcgtgagtattttgcagaa
gagcatgatcgaagggccagagctggcatagactatgattcttcctatgggaaggcccaa
ccaaatgataccattctgaagcttcagagaacagcaccatattacaagaggaacagagcc
catgtgtgcagtttctatgtgcgtggtgaatgtactagaggtgctgagtgcccatatcga
catgagatgcctgaaactggggagttatctcagcagaacatcaaagatcgttactatgga
gttaatgatccagttgcaatgaaacttttgagtaaggcaggtgagatgccatccctgaca
ccgccagatgatgagactataaggacactatacattggtggactcgatagcagagtaact
gaacaggatttgagggatcagttttatgcccatggtgagatcgagtccataaggatggtg
cttcagcgtgcatgtgcatttgtgacatacactacaagagaaggcgctgagaaggctgca
gaggagcttgctaacaagctagtcatcaagggtgtgcgactgaaactcatgtggggcaag
cctcaggctccaaagcccgaagaggatgagtctgggaggcaggggcaggtttcccacgga
ggactgctccctagggctgtcatatctcagcagcagagcggcgaccagcctcaaccccct
gggatggagggccagcagcaaccaccagcatcatactactttaacattccagcaccacca
gcagcagagcggactctgtacccatccatggatccccagaggatgggtgctgtagttaag
tcacaggatggtgaaggcaaaccagggctgcagcctggacatgctcagccatcaagtagc
tcagcacagggcggctatcctgcaccaccaccatactaccatggtcagtatccgccatac
tatgctcctccaccatacgttggctacatgcctccacctcgcatgccctacccacccctg
tacccaccataccagccgatgctagcaccaacagcacaagctcacgctagttcatctcag
caaccagcacaagcaggacagcagccgcctcatggccctccggctcagcagcagcagccg
gctcctggcccttcagcgcaacagcagccaactcagaactga
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