Setaria viridis (green foxtail): 117851890
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Entry
117851890 CDS
T07951
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117851890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117851890
03041 Spliceosome [BR:
svs03041
]
117851890
03009 Ribosome biogenesis [BR:
svs03009
]
117851890
03016 Transfer RNA biogenesis [BR:
svs03016
]
117851890
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117851890
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117851890
Spliceosome [BR:
svs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117851890
Complex C
U4/U6.U5 tri-SnRNP related factors
117851890
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
Pre-60S particles
Helicases
117851890
Transfer RNA biogenesis [BR:
svs03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117851890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
117851890
NCBI-ProteinID:
XP_034589692
LinkDB
All DBs
Position
4:386068..393702
Genome browser
AA seq
999 aa
AA seq
DB search
METLKRKAQDGPAAADNASPLKAARSDATEPPARTTLAAAEPVACVHDVSYPEGYDASAS
ASRLLAGGAEGSEPAKKFPFQLDPFQAEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMS
LRNQQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYK
GSEVMREVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAK
VHKQPCHIVYTDYRPTPLQHYVFPSGGDGLYLVVDEKGKFREDSFQKALNALVPASDSDK
KKENGKWQKAIIAGKSSEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLN
EDDEKANIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQ
EGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGIDQR
GICILMVDEKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQMRSEDGDPEKLLRYSFYQF
QADRALPDLEKQIKELELERNSMVIEEEESLKDYYELLQQYKSLKKDVRDIVLSPKHVLP
FLQPGRLVRLEYSTDEPATFSIDENITWGIIINFEKVKSHGEDRRPEDSDYTVDVLTRCS
VSKDSSGKKAMKIVPLKERGEPVVISLPLSQVDGLSSIRMYIPKDLLPVEARENTLRKVE
EVLSRFAKDGVPLLDPEEDMKVQSKSFRKATRRIEALESLFEKHDIRSSPHIQQKLKVLH
AKQELSAKIKSIKKTMRSSTALAFKDELKARKRVLRRLGYVTSDDVVEVKGKVACEISSA
DELTLTELMFSGTLKDATVEQMVALLSCFVWQEKLQDAPKPREELDLLFYQLQETARRVA
NLQLECKIQIDVESFVNSFRPDIMEAVYSWAKGSKFYQIMEMTQVFEGSLIRAIRRLEEV
LQQLILASKSIGETELEAKLEEAVSKIKRDIVFAASLYL
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggagaccctcaagcgcaaggcccaggacggccctgcggctgccgacaacgcctccccg
ctcaaggctgcgcgctccgacgccacggagcctcccgcccgcaccaccctcgccgccgcg
gagcccgtcgcctgcgtgcacgacgtctcctacccggaaggttacgacgcgtccgcctct
gcctcacgcttgctcgccggcggcgctgagggctctgagcccgccaagaagttccccttc
cagcttgatccgttccaggccgaggccatacgatgcctcgacaacggcgaatccgtcatg
gtttcagctcatacatcagccggaaagacagttgttgccttgtatgcaatagcaatgtct
ctgcgcaaccaacagcgtgtcatctatacatctccaatcaaggcattgagcaaccaaaaa
tacagagagttcaaagaagagttctcagatgttggtctcatgactggggatgtcacaata
gagcctaatgcctcctgcctggtcatgaccacggaaatttggcggagcatgcagtacaaa
gggtccgaggtcatgagggaagttgcttgggttatatttgatgaggtgcattacatgcgg
gatagagagagaggagtggtgtgggaggagagtatagtgatggctcccaagaactcacgc
ttcgtgttcctctcagctaccgtacctaatgcgaaggagtttgctgattgggtagctaag
gtacataagcaaccttgtcatatagtatacaccgactaccgacccacacctctccagcac
tatgtatttccttccggaggggatggattatatctggtagtggatgagaaggggaagttc
agagaggacagttttcagaaagcattgaatgcccttgtccctgctagtgacagtgacaag
aagaaggagaatgggaagtggcaaaaagctattatagcaggcaaatctagcgaggaaagt
gacatattcaagatggttaaaatgataattcagcgtcaatatgatcctgtgatacttttc
agctttagcaaaagggaatgtgaatttcttgctatgcagatggctaagatggacttgaac
gaggatgatgagaaggcaaacatcgaaacaattttttggagtgctatggatttgctttct
gatgatgacaaaaagcttccgcaggtttcaaacatgctccccttgctgaaacgtggcatt
ggcgtgcatcattctggtctgttgcccatcttgaaggaagtgatcgagattctcttccag
gagggcctcattaagtgtttgtttgctacagaaacattcagtattggtttgaacatgcct
gcaaagactgttgtgtttaccaatgtgcggaaattcgatggagatcgattcagatggttg
tcgagtggtgagtacatccagatgagtggccgtgctggtcgtcgaggtattgatcagcgt
ggtatctgtatcctgatggtagacgagaaaatggagccttcaactgccaaaatgatgctg
aaaggaagtgctgatagtttgaatagtgcctttcatctgagctacaatatgctgttaaat
caaatgcgatctgaggatggagatccagaaaagcttcttcggtattcattttaccaattc
caggctgatcgagctctccctgatcttgagaagcaaatcaaggaactggaattggaaaga
aattccatggttattgaggaagaggagagcttgaaggattactatgaactcttacagcag
tacaaaagtttaaagaaggatgtccgtgatattgtcctctctccaaaacatgttctgcct
ttcttgcaacctggaaggcttgtccgtcttgaatatagtacagatgagccagctaccttc
tccattgatgaaaatatcacatggggaattattataaactttgaaaaagtgaaatcccat
ggtgaagataggaggcctgaagattctgactatacagttgatgtccttaccaggtgttct
gtaagtaaggacagcagcggaaagaaagcaatgaagattgttcctctgaaagagcgtgga
gaaccagttgtaatttcattgccactttcacaggttgatggactaagcagcattcggatg
tatatacctaaggatcttttgcctgtagaagctcgagaaaacaccttgaggaaagttgaa
gaagtgctttcaaggtttgctaaagatggggtacctctgttggatccggaagaggatatg
aaagtacaatccaaatctttccggaaagctaccagaagaatagaagctctcgagagctta
tttgagaagcatgacatacgcagttctccacatatccagcaaaaactgaaagtcttgcat
gctaagcaagaattatcagctaaaataaagtccatcaagaaaacaatgcggtcctccact
gctttagctttcaaggatgagctcaaggcccggaagcgggttcttcgcaggctgggatat
gttacaagcgacgatgttgtggaagtgaagggcaaggtggcttgcgagataagctcggct
gatgagctaacattgacagagcttatgtttagtggcactttgaaggatgctactgtggaa
cagatggtggcgctgctttcttgctttgtttggcaggagaagctccaggatgccccaaag
ccaagggaggagcttgatttgctcttctaccagttgcaggagacggcaagaagggtcgct
aaccttcagcttgagtgcaagatccaaattgacgtggaaagttttgtaaattctttccga
cctgacataatggaagcggtgtattcatgggccaaagggtcaaaattctaccaaatcatg
gagatgacccaagtgttcgaaggcagcttgatcagggccatcaggaggctggaggaggtt
ctgcagcagctaattctggcatccaagtcgattggggaaaccgaattggaagcgaaactt
gaggaagcagtcagcaagatcaagagggatatagtgttcgctgcatctttgtacttgtaa
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