Setaria viridis (green foxtail): 117852007
Help
Entry
117852007 CDS
T07951
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03440
Homologous recombination
svs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117852007
03450 Non-homologous end-joining
117852007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svs03032
]
117852007
03400 DNA repair and recombination proteins [BR:
svs03400
]
117852007
DNA replication proteins [BR:
svs03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
117852007
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
117852007
BRCA1-C complex
117852007
NHEJ (non-homologous end-joining)
MRX complex
117852007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SbcC_Walker_B
SMC_N
AAA_13
Rad50_zn_hook
AAA_29
Nuf2_DHR10-like
DUF1031
LysC
ABC_tran
Mucin15
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
117852007
NCBI-ProteinID:
XP_034589815
LinkDB
All DBs
Position
1:complement(23568386..23585493)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPDNKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNSR
SGHTFVHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAVLENVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTFRLKLENLQTVKDQAFKLRENIAQDLEKSDASKS
QMEQLKEKIQGIENEMKHMKTSLDELRRLQGQISTKAAERSTLFTLQQQQYAALSEENED
TDEELMEWQTKFEERIALLETKISKLGREMDDEATKGYLLSQTISELTRDIGKLQAEADA
HMSMKQERDSEIKKIFAKHNFGPVPEFPFTNDVALNLTNRIKARLSNLENDLQEKKKSND
DQLDVLWKHYLKVNARNSEVDGQIQSKIESMSGISRRTKDKEKERDAAEVELLKLNLSRI
DERERHMQIEVERKTLALGERDYDSIINQKRTEIFSLDQKIKALQREKDSINRDADDRVK
LGLKKDALESSKEKLKEMVDEHKDKIRNILRGRLPAEKDMKKEINQAFWPVDKEYNELKS
KSQEAEQEFKLAQSKVSDAREQLTKLRKDLDAKRRFLDSKLQSISQISADIDMFPKVLQD
AKDKRDEQKRLEIYANGMRQMFVPFEQVARDRHVCPCCERAFTPDEEDEFVKKQRMQNAS
TAERVKALAMEYSEAETFFQQLDKLRTVYDDYMKLVEETIPLAEKNLNQRLADESQKEQT
FDDLLGVLAQVKIDRDAVEALLQPTDAIDRHAREIQQLVGEVEDLEYKLDSCGQGVKSLE
EIQQELNSVQRTRDTLSIEVDDLRDQHRMLNEDLASAQVRWHTAREEKIKASNTLGSFKK
AEEELVRLAEEKEQLAVEKKLLEESLDPLSKEKDSLLQEYNALKQRFDEEYHRMAERKRD
FQQELDALGRLNMKIKEYLDSKRAERLNDLQEIHSLKQSELQNCEAKKQGISDELNKSKE
LLQGQGQLKRNIDDNLNYRKTKAEVDRLTRDIELLEERVLSIGSSSTIEADLKRHSQERE
RLNSEFNRCQGTLSVYQSNITKHKQELKQTQYKDIEMRYTNQLLQLKTTEMANKDLDRYY
AALDKALMRFHTMKMEEINKIIKELWQQTYRGQDIDYISINSDSEGAGTRSYSYRVVMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLATALL
RIMEARKGQENFQLIVITHDERFAHLIGQRQLAEKYYRVSKDENQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggtggacaagatgctcatcaaggggatccggagcttcgaccccgacaacaag
aacgtcatcaccttcttcaagcccctcaccctcatcgtcggccccaacggcgccggcaag
acaacaatcatcgagtgcctgaagctgtcctgcaccggcgagctgccacccaactcccgc
tccggccacaccttcgtccacgaccccaaggtagctggagagacggaaacaaaagggcag
attaagctgcggtttaagacagcggcaggaaaggatgtggtgtgcatccgatccttccag
cttacccaaaaggcatcaaagatggagtttaaggcaattgaaagtgttctccagactata
aatccacacacgggcgagaaggtctgtctcagctacagatgtgctgacatggatagagag
attccagccttaatgggtgtttcaaaggctgtactggagaatgttatatttgtgcaccaa
gatgagtcgaattggccattgcaggacccttcaacgcttaagaagaagtttgatgacatt
ttctctgcgacccgctataccaaagctctagaagtcataaagaaacttcacaaggatcaa
gctcaagagatcaagacttttaggttgaagctggagaatcttcagactgtaaaagatcaa
gcatttaagcttcgtgaaaatattgctcaagatctagagaagtcagatgcctcaaaatct
caaatggagcaactgaaggaaaaaatccaaggtatcgagaatgaaatgaagcatatgaaa
acaagtctggatgaattgagaagacttcaggggcaaattagcaccaaagcagcggagaga
agtacattatttacacttcagcagcaacagtatgctgcactttctgaggaaaatgaagat
accgatgaggaactaatggaatggcaaacaaaatttgaagaaaggattgcactactagaa
actaaaatcagtaaactaggaagagagatggatgatgaagcaacaaaaggatacttgctg
tcccagacaatctctgagttaacacgtgacataggaaagctccaggcagaagctgatgct
cacatgtctatgaagcaggaacgagactctgagataaaaaagatattcgccaaacataat
tttgggccagttcctgaatttccctttacaaatgatgttgctctgaaccttacaaacaga
attaaagcgagactctcaaatcttgagaatgatttgcaggagaagaagaaatccaatgac
gatcagttagatgttttgtggaaacactatcttaaagtaaatgctcgcaactctgaagtt
gatggacagatacagtctaagattgaatccatgtcaggtatttcaaggcgcactaaagat
aaagagaaagaacgtgatgctgcagaagtggagcttttgaagcttaatctgtcccgtatt
gacgaaagggagagacatatgcaaattgaagttgagaggaagacacttgcccttggagaa
agagactatgattctattataaatcagaagaggacagaaatatttagtttggatcagaaa
atcaaagcacttcagcgggagaaagatagcataaatagagatgctgatgacagagtaaaa
ctgggtttgaagaaggatgcgttggaaagcagcaaggagaagctgaaggagatggttgat
gagcacaaggacaaaatcagaaatattcttaggggaaggcttcctgctgagaaggatatg
aagaaggagatcaatcaagccttttggcctgtggataaggaatacaacgagttaaaatca
aaatcccaggaagcagagcaggagtttaaactggctcagagcaaggtatctgatgctaga
gaacaattaacaaagcttcgaaaagatttggatgcaaagagaagattcctggactcgaag
cttcaatctatttcacagatttctgctgacattgacatgtttcccaaagttctgcaagat
gccaaggacaaaagagatgaacagaaaagattagagatatatgcaaatggaatgcggcag
atgtttgtaccttttgaacaagtggctcgtgatcgtcatgtatgcccatgctgtgaacgt
gcttttacacctgatgaggaagacgagttcgtaaagaaacaaaggatgcagaatgcaagc
actgcagagagagttaaagctctggcaatggaatactcagaagccgaaaccttttttcag
caactggataaacttcgtactgtctatgatgattacatgaagctggtagaagagactata
cctctagcagagaagaacttgaatcaacgtttggcggacgaaagtcagaaggaacaaaca
tttgatgatcttttgggcgttcttgcccaagttaaaattgacagggatgcagtggaagcc
ttgttacaaccaacggatgctattgacaggcatgcacgtgaaatacaacagctggtcgga
gaagtagaagatcttgaatataaacttgattcttgtggccaaggtgttaaatctttggag
gaaattcaacaggagctaaactccgtccagaggacaagggacacattgagtattgaagtg
gatgatcttagggatcagcacagaatgctaaatgaggatttggcaagtgctcaggtgaga
tggcacactgctcgggaagagaagataaaagcttcaaacacgttgggtagtttcaaaaaa
gctgaagaggaattggtgcgtctagctgaggaaaaagaacaactggccgtagaaaagaag
cttttagaagagtctcttgatccattgtctaaagagaaagatagcttgttgcaagagtat
aatgctttgaagcaaaggtttgatgaagaatatcatcggatggcagaaagaaaaagggac
ttccagcaagaacttgatgcacttggaagactcaatatgaagatcaaagagtacttggat
tccaaaagagcggaaaggcttaatgatttgcaggaaatacactcacttaaacaatctgag
ctacagaattgtgaggcaaaaaagcaaggcatatcagatgaattaaacaagagcaaagaa
ctactgcagggtcagggccagttgaaaagaaacatagatgacaatctcaactacaggaaa
acaaaggctgaagtggatcggcttactcgtgatatagagttacttgaagagagagtgctt
tcaataggcagctcgtctactatagaagctgatctgaagcgtcattctcaagaaagagag
aggcttaattcagagttcaacaggtgtcaaggaacactttctgtttatcaaagtaatata
acaaagcacaagcaagagcttaaacagacacagtacaaggatatcgagatgcggtatact
aatcaacttctccaacttaagacaactgaaatggcaaacaaggacttggacagatattat
gctgctttagacaaggctctcatgcgcttccacactatgaagatggaggagataaataaa
ataatcaaggaactgtggcaacagacatacagaggccaagatattgattacataagcatc
aattctgattctgagggtgctggcactcgatcatacagctaccgtgttgttatgcaaacg
ggtgatgctgagctagaaatgagagggcgatgcagtgctggtcagaaggtgcttgcttct
ctcataatcagactagcactggcggaaacattctgtctgaactgtggcatattggccttg
gatgagccgactacgaatctagatggcccaaatgcagagagccttgctactgcgctgttg
agaataatggaggccaggaaagggcaggagaacttccagctgattgtaatcacccatgac
gagaggttcgcccatcttatcggtcaaaggcagcttgctgagaagtactatcgagtctcc
aaggatgaaaaccagcacagcataattgaagcccaagagatatttgactga
DBGET
integrated database retrieval system
