Setaria viridis (green foxtail): 117852209
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Entry
117852209 CDS
T07951
Name
(RefSeq) U-box domain-containing protein 12
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
117852209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117852209
Enzymes [BR:
svs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117852209
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
U-box type E3
117852209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
HEAT_2
zf-RING_UBOX
Arm_2
ARMC9_ARM
HEAT_EZ
zf-C3HC4_4
zf-Nse
zf-C3HC4_2
Drf_GBD
zf-C3HC4
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
117852209
NCBI-ProteinID:
XP_034590097
LinkDB
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Position
4:247706..250385
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AA seq
600 aa
AA seq
DB search
MPARLAAEIAALPEPRGPMRRLCGDLARRIRLLAPLLQQDQLQDALPLADALGAARDLLR
AVHDGSKIYQAMRGDGMLDRFASVNSQIQLALDALPYHTFDMPEEVQEQVALVHSQFKRA
ATRMDPPDAQLSKDISSALADKTFDPLVFTRISEKLQLQTMADIKKESVALHEMVISSGG
EPDGCVEEMSSLLKKLKDCVITEPPAPEALGASFASINHRSPIIPDEFRCPISLELMQDP
VIVSSGQTYERPCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLIAQWCEANGIELPK
NKANSRDKKAAKSSDYDHDGLVSLMTRLRGGNQDEQRAAAGEIRLLAKRNVNNRICIAEA
GAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVGSHAIPKIVEVLKTGSMEARE
NAAATLFSLSVVDENKVTIGGAGAIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKIRA
VKAGIVIHLMNFLVDPTGGMTDEALTLLAILAGNPEARAVISQSDPIPPLVEVIKTESPR
NRENAAAILWSLCCADVEQTKAAKVAGAEDALKELSESGTDRAKRKSSSILELMRQAEEA
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgcgtttggcggcggagatcgccgcgctcccggagccgcgcgggcccatgcgc
cgcctctgcggtgacctcgcgcgccgcatccgcctccttgcgcccctcctccagcaggac
cagctccaggacgccttgcctctcgccgacgcactcggggccgcgcgcgacctcctccgc
gcagttcacgacggcagcaagatctaccaggcgatgcgaggggatggcatgctcgatcgc
ttcgcaagcgtcaacagccagattcagctggccctggatgccttgccctaccacaccttc
gacatgcctgaagaagtgcaggagcaggtcgcgcttgtgcattctcagttcaaaagggct
gcaaccagaatggatccaccagacgcgcagctctcaaaggatatatcctccgctctcgct
gacaagacctttgaccctctggtcttcacaaggatctcagagaagttgcaactgcagact
atggccgatatcaagaaagaatccgtcgccctgcatgagatggtcatctccagtggcggc
gaacctgatggatgtgttgaggagatgtcttccttgctcaagaagctcaaagactgtgtc
atcactgaacctcccgcaccagaggcgctcggtgccagctttgcctccataaatcacaga
tctcctatcatccccgatgaattcagatgcccgatatcccttgagctcatgcaagaccct
gtcatcgtttctagtgggcagacatatgagcgaccgtgcatccagaaatggcttgattct
ggacacaagacatgccctaagacgcagcagcccctctcacatacttcactgacaccaaac
tttgtcctcaaaagcctaatagctcagtggtgtgaagccaacggcattgagcttccgaag
aacaaagcaaattcccgagataagaaagcagcaaaaagctctgactatgaccatgatggt
ctagtctcactgatgacaaggctgaggggtgggaaccaagatgagcagcgggctgctgct
ggtgagatacgtttgcttgcgaagagaaatgtcaacaacaggatatgcattgctgaagca
ggagcaattcccttgcttgtcaatctactctcctcttcggatccaagaacgcaggaacat
gctgtcacagcgctccttaacctctccatccatgagaacaacaaggcaagcattgtgggc
tctcatgctatccctaagattgtggaagtgctcaaaactgggagcatggaagccagagag
aatgcagccgccacactattcagcttgtcagttgtagatgaaaacaaggttacaattggt
ggtgctggcgcaatacctccactcattaatcttctgtgcgatgggagcccacgaggcaag
aaagatgcagcaacggcaatttttaatctgtgcatataccagggaaataagatccgggca
gtaaaagctggaatcgtcatccatttgatgaacttcttggtggatcctaccgggggaatg
actgatgaggcgctcactcttttggctattcttgctggtaaccctgaagccagggctgta
atttcgcagtcggatccgatccccccacttgtggaggtaattaaaacagagtctcctcgc
aatagagagaacgctgcagccattctgtggtcgctttgttgtgctgatgttgagcaaacg
aaggctgcaaaagttgctggagcagaggatgcactcaaggaactgtcggagtctggcacg
gaccgtgcaaagagaaaatcttctagcattctggaactcatgcggcaagctgaagaagca
tga
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