Setaria viridis (green foxtail): 117852234
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Entry
117852234 CDS
T07951
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117852234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117852234
Spliceosome [BR:
svs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117852234
Complex C
U5 SnRNP specific factors
117852234
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
117852234
NCBI-ProteinID:
XP_034590129
LinkDB
All DBs
Position
4:4475414..4484839
Genome browser
AA seq
2363 aa
AA seq
DB search
MWNGAPPPPPPHMAAAPPPPGTTGAGAGQPPPPPPPAGAPQGAKPLTPAELEAQLVEKAR
KWHQLNSKRYGDKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFV
PHAVYKLLENMPMPWEQVRHVKILYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREK
RDRRHFKRMRFPPFDDEEPPLDYADNLLDVEPLEAIQLELDSEEDAAVYEWFYDHKPLMK
TKLINGPSYRKWHLSLPIMATLYRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGG
PKFEPLYRDMEKGDEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVRLGIYHTPM
IMYIKTEDPDLPAFYYDPLINPITSTNKVDRRERKVTEEDDDEDFCLPEDVEPLLKSTEL
YTDTTAAGISLLFAPKPFNMRSGRTRRAEDIPLVSEWFKEHCPPAYPVKVRVSYQKLLKC
YVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNL
NYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQ
LADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPM
WRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDV
LDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNV
AHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTT
VHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDN
PHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKR
HLFPNWVKPADSEPPPLLVYKWCQGINNLQDVWDTSDGQCVVMLQTKFEKFFEKIDLTLL
NRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLIL
GLTRASELAGPPQMPNEFLTYADTKIETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRY
LTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENS
FVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRV
DDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCE
NKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTH
FRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSW
DRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRT
DVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNR
RFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMD
LCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWQMSKPSLVSESKDLF
DQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLH
SAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIF
SNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKR
LGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLP
FQACLKIEKFGDLILKATEPQMVLYNIYDDWLKSISSYTAFSRIVLILRALHVNNEKAKM
LLKPDKTIVTEPHHIWPTLNDEQWLKVECALRDLILSDYAKKNNVNTSALTQSEIRDIIL
GAEIAPPSQQRQQIAEIEKQSRETTQLTAVTTRTTNVHGDELIITTTSPYEQQAFASKTD
WRVRAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICVADLRTQIAGFLYGLS
PQDNPQVKEIRCIAIPPQHGTHQMVTLPANLPEHEFLNDLEPLGWMHTQPNEAPQLSPQD
LTSHAKILEGNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRSNKDNGSNPHGYL
PTHYEKVQMLLSDRFLGFYMVPDNVPWNFNFMGVKHDPLMKYNMKLGMPRDFYHEDHRPT
HFLEFSNIEEGEVAEGDREDTFS
NT seq
7092 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacggcgcgccgcctccgccgccgccgcacatggcggcggccccgcctcctccg
ggcacgacgggggccggggcaggccagcccccgcccccgccgccgccggccggggcgccg
cagggcgccaagccgctgacgccggcggagctggaggcgcagctggtggagaaggcccgc
aagtggcaccagctcaactcgaagcgctacggagacaagcgcaagtttgggttcgtcgag
gcgcagaaggaggacatgcctcctgagcacgtccgcaaaatcatcagagatcacggagac
atgtcctccaagaagtacaggcacgacaagcgtgtttatcttggagcgctcaaatttgtg
ccccatgctgtctacaaactactggagaacatgccaatgccttgggagcaggttcggcat
gtgaaaattttgtatcacattactggggctatcacttttgtaaatgaaatcccctgggtg
gtggaacccatataccttgcacagtggggtacaatgtggatcatgatgcggagagagaag
agggataggcggcattttaaacgaatgcgctttcctccatttgatgatgaggagcctcca
ctggactatgctgataatctgttggatgttgaaccactcgaggccatacagttggagttg
gacagtgaagaagatgcagctgtatatgaatggttctatgaccacaagcctcttatgaag
accaagcttataaacggccccagctacaggaaatggcatctatctcttcccataatggca
acactatatcgccttgctggccagctgttgtcagacctgattgataggaattatttctac
ttgtttgatatggaatctttctttactgccaaagcactaaatatgtgcattccagggggt
ccgaagtttgaaccgctgtaccgtgatatggagaagggtgatgaggactggaatgagttt
aatgacataaataaactcatcatacgtcagccacttcgaactgagtataggattgctttc
cctcatctatacaataacaggccaaggaaagtgagacttgggatctatcatacccccatg
ataatgtatatcaagacagaggatccagatttgccagcattctactatgatcctctgata
aatcccatcacttcaactaacaaggttgatcgtcgggagaggaaagtaaccgaagaggat
gatgatgaagatttttgtctcccagaagacgtggaacctctcttgaaaagcactgaactc
tacactgatacaacagccgctggtatatcattgctttttgctccaaagccttttaacatg
cgatctggcagaacacgtcgtgcagaggacattcctcttgtatcggagtggttcaaggag
cattgcccaccagcttatcctgtgaaagttcgtgtgagttaccagaagctgttgaagtgt
tatgtactcaatgagctacatcataggcctcccaaggctcagaaaaagaagcatctgttc
cgttcactccaagcaacaaagtttttccaaactactgagcttgactgggcggaagcaggc
ctgcaagtttgcaagcaggggtacaacatgctgaacttgttgattcacaggaagaatctt
aactatcttcatttagactacaatttcaatttgaaacccgtgaagactcttacaacaaag
gaaaggaaaaaatctcgttttggaaatgcattccatctgtgtcgtgaaattttacgactt
actaagttggtcgttgatgctaacatccagttccgtctgggaaatgttgatgctttccag
ttggcagatggtctgcaatacatattctctcatgttggccagctaactggtatgtatagg
tacaagtaccgattgatgaggcagattaggatgtgcaaggatctgaagcacttgatatat
taccgtttcaacactggccctgttggaaaaggacctggctgtgggttttgggctccaatg
tggagagtgtggctcttcttccttcgcggtattgtcccattattggagcgctggttgggt
aatttgttggcaaggcagtttgagggtcggcattcgaagggagtagccaaaaccgtaaca
aagcaacgtgttgagtctcattttgatttggagcttcgtgctgcagttatgcacgatgtt
ctagatgctatgccagagggcatcaaacaaaacaaggcccggactatattacagcatctt
agtgaggcatggcgatgctggaaggcaaatatcccatggaaagtccctggcctacctgtg
cctattgagaacatgattcttcgttatgtgaagtcaaaggcagattggtggacgaatgtt
gctcattacaaccgtgagcgtatcaggcgtggtgctacagttgacaagactgtttgtcgg
aaaaatcttggaaggttaactcgtctatggctgaaggcagaacaagagaggcaacacaat
tacctgaaagatgggccatatgtaactcctgaggaagctgttgctatttatacaacaaca
gttcactggctggaatcaaggaagttctcaccaattccttttccgccactatcatacaag
catgacaccaaacttcttatacttgcactggaaaggctgaaggagtcatacagtgtagca
gttaggttgaaccaactgcagcgggaggagcttgggttgattgaacaggcttacgataat
ccacacgaagcactgtcaaggataaaaaggcatcttcttactcagcgggcgttcaaagaa
gttggcatagaattcatggacttatacagctacttgatcccagtatatgaaatcgaacct
cttgaaaaaatcactgatgcataccttgaccagtacttgtggtacgagggggacaaacgc
catctcttcccaaattgggtgaagcctgctgattctgaaccaccacctctacttgtttat
aaatggtgccagggcataaacaatttacaggatgtatgggacacaagtgatggacagtgt
gttgtgatgctccagacaaaatttgagaagttctttgaaaaaattgatctgacactgttg
aacaggcttcttcggttggtcttagatcataacatagctgattatgttactgcaaagaac
aatgttgtgttgtcttacaaggacatgagccacacaaattcttatggtctcattcgaggg
cttcagtttgcatctttcgttgttcagtattatggccttgtgctggatctcctgattctc
ggtctaacacgtgcaagtgagcttgctgggccacctcagatgccaaatgagttccttaca
tatgctgacacaaaaattgagacaaggcatcccatcagattgtattctcgatatattgac
aaggtgcacatattgttccgcttcactcatgaggaagcgcgagatctaattcagcggtac
ttgacagaacatcctgatcctaacaatgagaacatggttggctacaataacaagaaatgt
tggcctagagatgcaagaatgaggctgatgaaacatgatgtaaatcttggaagaagtgtg
ttctgggatatgaagaaccgccttccacggagtattacaaccttagaatgggagaatagc
tttgtctctgtttacagcaaggacaatccaaacctgctttttagcatgtgtgggtttgaa
gtccgtatactgccaaagatacgaatgactcaggaggcattcagcaacacaaaggatgga
gtatggaatttgcagaatgaacagacaaaagaaaggacagcaattgcctttctgagagtc
gatgatgagcatatgaaggtgtttgagaaccgtgttaggcagattctaatgtcatcaggg
tcaacaacattcaccaagatagtcaacaagtggaatactgctctcattggccttatgaca
tatttccgcgaagcaacagtccatacgcaggagcttttggatttacttgtcaaatgtgaa
aacaagatccagactcgtataaagattggcctgaattcaaagatgcctagtaggtttcct
cctgtcatcttctatacacctaaggaaattggaggtctaggaatgctgtcgatgggtcat
attcttataccacaaagcgatcttaggtacagtaagcagacagatgttggtgtaacacat
ttccgaagtggtatgagccatgaagaggaccagcttattcctaacttgtatcgctacatc
cagccatgggagagtgagtttattgattcacagcgtgtttgggctgagtatgctttgaag
aggcaggaagcacaatctcaaaacagacggttgacccttgaggatcttgaagactcatgg
gatagaggtatacctcgtatcaacactcttttccaaaaggaccgccatacgctagcctat
gataaaggatggagagtgagaacagattttaagcaatatcaagtgctgaaacagaaccca
ttctggtggacacatcagcggcatgatgggaagctttggaacctaaataactacagaact
gatgtcattcaagcgcttggtggtgtagaaggtatcctggaacatacattatttaaagga
acttatttccctacctgggagggtctgttttgggagaaggcatcaggtttcgaagagtct
atgaaatacaagaaactgacaaatgcacagcgttctgggctcaatcaaatccccaatcga
agatttaccctgtggtggtcaccaaccatcaatcgtgcaaacgtgtatgttggtttccag
gtccagctagatcttacggggatattcatgcacgggaaaattcccacattgaagatttct
ctgatccagatcttccgtgcacatctgtggcagaagatacatgaaagtgttgttatggat
ctttgccaagttttggaccaagagttggatgcactggagatcgagactgtacagaaagag
acaatacatcccaggaagagttacaagatgaacagttcatgcgcagatatcctcctcttt
gctgcacacagatggcagatgtcaaaaccaagcttagtttctgagtcgaaggatctcttc
gatcagaaagcaagtaacaagtattggattgatgttcaactgcgttggggagattatgat
tcgcatgacatagaacgttatacaagagccaagttcatggattacacaacagacaatatg
tccatctacccatcacctactggggtgatgattggaattgatctagcgtataatttgcac
tccgcttttggcaactggttccctgggtcaaagcccctacttcagcaagcaatgaacaag
atcatgaagtcaaatcctgctctgtatgtgctgagggagaggataaggaagggtctgcag
ttgtactcatctgaacccactgaaccatatctgtcttcacaaaactatggagagatcttc
agcaatcaaatcatatggtttgtggatgatacaaatgtgtatcgagtcactattcacaaa
acttttgagggtaacttgaccacaaaaccaatcaacggtgctattttcattttcaatcca
agaactggtcaacttttccttaaggttatccacacaagtgtatgggcggggcaaaagcgt
cttggacagctggccaagtggaaaacagctgaggaggttgctgcattggttcgatctctg
cctgtagaagagcagccaaagcaaattattgtgacaaggaagggcatgttggatccattg
gaggtccatctactcgacttccctaacattgttatcaagggcagtgagctgcaacttcct
ttccaggcttgcttaaagattgagaagtttggtgatcttattctgaaggcaactgaacca
cagatggttctttataatatatatgatgattggttgaaaagtatctcttcatacacagca
ttctctcgtatcgtacttattctacgggctctacatgtgaataacgagaaggcaaagatg
ttgctcaaacctgacaaaacaattgttactgaaccacatcatatatggccaactttgaat
gatgaacagtggttgaaggttgaatgtgcactaagggacctcattctttctgattatgca
aagaaaaacaatgtcaatacttctgcactgacgcaatctgaaattcgagatatcatactt
ggtgctgaaattgctccaccatcacagcagcggcaacagatagctgagattgagaaacag
tctagagagacgactcagttaactgctgttaccacaaggacaacgaatgtacatggagat
gagctcattatcacgacaacaagtccatacgagcaacaagcgttcgcatcgaagactgat
tggcgtgtcagggccatctctgccacaaacttgtatcttcgtgtcaatcacatttatgtc
aattctgacgatataaaggagactggctacacttatattatgccaaagaacatactgaag
aagttcatatgcgtagcagatctgcggacacaaatcgctggattcttgtatgggctgagt
ccacaggacaatcctcaagttaaagagatcaggtgtatagccattccaccgcagcatgga
actcaccagatggtgaccctgccagcaaatcttcctgagcatgagttccttaatgacctg
gaaccattgggatggatgcatacccagccaaatgaagctccacagctatcaccacaggac
ctgacatcacatgctaagattctggagggcaacaaacaatgggatggtgagaagtgcatc
attctgacatgcagcttcacgccaggatcttgctcgttgactgcatacaagctgacacca
agcggttacgagtggggacgcagcaacaaggacaatgggagcaacccgcatggatacctc
ccaactcattatgagaaggtccagatgcttctgagtgaccgcttccttggcttctatatg
gttccagataacgtcccttggaacttcaacttcatgggggtgaagcatgacccgctgatg
aagtacaatatgaagctgggcatgccccgggacttctaccacgaggaccaccggccaaca
cacttcctggagtttagcaacatcgaggagggtgaggtcgcagaaggggatagggaggac
accttctcgtag
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integrated database retrieval system
