Setaria viridis (green foxtail): 117852317
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Entry
117852317 CDS
T07951
Name
(RefSeq) protein argonaute PNH1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117852317
03036 Chromosome and associated proteins [BR:
svs03036
]
117852317
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117852317
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117852317
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
117852317
microRNA pathway
RISC loading complex
117852317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
117852317
NCBI-ProteinID:
XP_034590240
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All DBs
Position
4:complement(34375903..34389632)
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AA seq
965 aa
AA seq
DB search
MLEVLDMAPPPPPPQARHQQGPAGKGRKQPLQSSVAQPKAEPAAPAAVVPPEGGKRCGGG
GGGGGRRRGGRGRAKAAVAAAEPRALQAPAHAPPPRTVIGPPVPSSKGLSFCRRPGFGTI
GARCVVKANHFLAELPDKDLTQYDVKITPEVSSRAVNRAIIAELVRLYRASDLGMRLPAY
DGRKNLYTAGTLPFDAREFVVRLTDEDDGTGVPPREREFRVAIKFAARADLHHLRQFIAG
RQADAPQEALQVLDIVLRELANQKYVSIGRSFYSPDIRKPQRLGDGLQSWCGFYQSIRPT
QMGLSLNIDMSSTAFIEPLPVIEFVAQILGKDVISRPLSDANRIKIKKALRGVKVEVTHR
GNVRRKYRISGLTTQPTHELIFPIDDQMNMKSVVEYFKEMYGFTIQHRHLPCLQVGNQKK
ANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPREQEMDILQTVQQNGYEQDPYAK
EFGINISEKLTSVEARVLPAPWLKYHDTGKEKECLPQVGQWNMVNKKVINGCKVSHWACI
NFSRSVPEATARGFCQELSQMCQISGMEFNSEPVIPIYSARPDQVVKALKHVYNIALNKL
KGKELELLLVILPDNNGPLYGDIKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINV
KMGGRNTVLLDAISWRIPLVSDIPTIIFGADVTHPETGEDSSPSIAAVVASQDWPEVTKY
AGLVCAQAHRQELIQDLYKTWHDPQRGTVTGGMIRELLISFRKATGQKPLRIIFYRDGVS
EGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHKDRSSMDKSGNI
LPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTY
ARCTRSVSVVPPAYYAHLAAFRARFYMEPEMSENQTSKSSNGMNGASVKPLPAVKEKVKR
VMFYC
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaggtcctggacatggcgccgccaccgccgccgccgcaggcgcggcaccagcag
gggcccgccggcaaggggaggaagcagccgctgcagagcagcgtggcgcagcccaaggcg
gagccggcggcgcctgctgcggtcgtgccgccggagggaggcaagaggtgtggcggcgga
ggaggaggaggagggaggcgccgcggcgggcgcggccgggccaaggctgctgtggcggct
gcggagccgagggcgctccaggcgcccgcccacgcgcctccgccgcgcacggtcattggg
ccgcccgtgcccagcagcaaggggctgtcgttctgccggcggccaggcttcgggaccatc
ggcgcgcgctgcgtcgtcaaggccaaccacttcctcgccgagctccccgacaaggacctc
acccagtacgacgtcaagatcacgccggaggtgagctcgcgggccgtgaaccgggccatc
attgcggagctggtccgcctctaccgcgcgtccgacctcggaatgcgcctcccggcctac
gacggccgcaagaacctctacaccgccgggaccctcccgttcgacgcgcgcgagttcgtc
gtgcgcctcaccgacgaggacgacggcaccggcgtcccacctcgggagagggagttcagg
gttgccatcaagttcgccgcgcgcgccgacctccaccacctccggcagttcatcgccggg
cggcaggcggacgccccgcaggaggccctgcaggtcctcgacatcgtgctccgggagctc
gccaaccagaagtacgtctccatagggcggtccttctactcgccggatatcaggaagccg
cagcgactcggagatggcctccagtcctggtgtgggttctaccagagcatccggccgacc
cagatgggattgtcgcttaacatcgacatgtcgtccacggcgtttatcgagccgcttccg
gtgatcgagttcgtggcccagatattagggaaggatgtcatatcgaggccattgtccgat
gctaaccgaatcaagatcaagaaggcactgcgaggcgtaaaagttgaggtcactcaccga
ggaaatgtaaggcggaagtatcgcatttctgggctaacaacgcaaccaactcacgaactg
attttcccaattgatgatcaaatgaatatgaaatccgtagtggagtacttcaaggaaatg
tatgggttcactattcagcatcgtcaccttccctgccttcaggttggaaaccaaaagaag
gcaaactatcttccgatggaggcctgcaagattgttgagggtcagagatacacgaagagg
ctgaatgaaaaacagatcacatcattgctgaaggttacgtgccaaaggcctagagaacaa
gagatggatattctacagacagttcagcaaaatggatatgagcaagatccatatgcaaag
gaatttggcatcaacataagcgagaagctaacctccgttgaagctcgagtccttcctgca
ccttggctgaaatatcatgatactggaaaagagaaagagtgcttgccacaggttggtcaa
tggaacatggtaaacaagaaagtgatcaatggatgcaaggtgagccactgggcttgtata
aacttttcaaggagtgttccagaagctactgctcggggattttgccaggaattgtcacaa
atgtgccagatttcgggcatggaatttaacagtgagcctgtgataccaatatattcagct
agaccggatcaagtggtaaaggcacttaaacatgtgtataatattgcattgaacaaactc
aagggtaaagaacttgagcttcttttggtgatccttcctgacaacaatggtccattgtat
ggtgacatcaaacgtatttgtgaaactgatttgggattgatatcgcaatgttgcttaacg
aagcatgtttttaagatcagcaagcagtacttggcaaatgtctccctgaaaattaatgtt
aagatgggaggaagaaacactgtgctcttggatgcgataagttggaggattcctttggtc
agtgacataccaacaattatatttggtgcagatgtaacacatccagaaactggggaggac
tcaagtccatcaattgctgcagttgttgcatctcaagactggccagaagttacaaagtat
gctggattggtttgtgctcaggcacatcggcaagagcttattcaagacctttacaagaca
tggcatgatcctcagagaggcaccgtaacaggcggcatgatcagggagctcttaatatca
ttcaggaaagccactgggcagaaaccattgagaataattttctacagggatggcgttagt
gaaggtcagttctatcaagttctcctttacgagttagatgctatccgtaaggcgtgtgca
tccctagaaccaaattaccagcctcctgtaacattcgtggtcgttcaaaaacgtcaccat
acaagactatttgcaaacaatcacaaagacagaagcagcatggacaagagtggaaatatt
ttgcctgggactgtcgttgattctaagatatgccatccaacagagtttgatttctacctc
tgtagtcatgctggaattcagggaacaagtaggcctgctcactaccatgtcctctgggat
gagaataatttcacagcagacgaaatgcagacattgacaaacaacctttgctacacttac
gcaaggtgcacacgctctgtttctgtagtcccgcctgcatactacgcccacctggcagca
ttccgggctcgtttctacatggaaccagagatgtcagagaaccagacgtcaaagagctcc
aacggcatgaatggagcctcggtgaagcccctgcccgccgtgaaggagaaggtgaagagg
gtgatgttctactgctga
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