Setaria viridis (green foxtail): 117852646
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Entry
117852646 CDS
T07951
Name
(RefSeq) protein argonaute 1D isoform X1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117852646
03036 Chromosome and associated proteins [BR:
svs03036
]
117852646
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117852646
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117852646
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
117852646
microRNA pathway
RISC loading complex
117852646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
117852646
NCBI-ProteinID:
XP_034590721
LinkDB
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Position
4:39755412..39763922
Genome browser
AA seq
1092 aa
AA seq
DB search
MPPSVPCPFSFSFFSRRGSVSPFPPGETISSSFSAHCFAAPGMGSWRPRMPGFGEGSQAA
EPGGGGRGPGRGFRGRGASYHQQFPQGGRGAGYYQHGQGAASQPRGAMTPQQWRPAGPAA
GYLGHGQAYREVQPPQNYGGDRGGRGSAPSAIAPELRQAMETSHEPDNISSPEAGSPDLS
PRASTVEVTDQLKDLSVQGESSVGQEIVQAFPVSHNSYKFPHRPGNGSIGTRCLVKANYF
FAELPDKDLHQYDVSITPDVTSRIRSRSVMEELVKLHKMSYLGGRLPAYDGRKSLYTAGP
LPFTSKEFHITLLEEDDGSGVERRQKTYKVVIKFAARADLRRLEQFIAGRQAEAPQEALQ
VLDIVLRELPTARYAPFGRSFFSPDLGRRRSLGEGIESWRGFYQSIRPTQMGLSLNIDMS
ATAFFEPLPVIDFVAQLLNTDIHSRPLSDAERVKIKKALRGVKVEVTHRGNMRRKYRIAG
LTSQATRELTFPVDQGGTVKSVVQYFQETYGFAIQHTYLPCLQVGNQQRPNYLPMEVCKI
VEGQRYSKRLNQSQIRALLEETCQRPHDRERDIIQMVNHNSYHEDPYAKEFGIKISERLA
SVEARILPAPRLKYNETGREKDCLPRVGQWNMMNKKMVNGGRVRSWFCVNFARNVQESVA
SGFCRELARMCQASGMDFALEPILPPMHAHPDQVERALKARFHDVMNMLGPQRKELDLLI
GILPDNNGSLYGDLKRVCEIDLGIVSQCCCAKQVFKMNKQILANLALKLNVKVGGRNTVL
VDAVSRRIPLVTDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQSH
RQELIEDLYKVTHDPQRGTICGGMIRELLISFKRSTGQKPQRILFYRDGVSEGQFYQVLL
HELDAIRRACASLEANYQPQVTFIVVQKRHHTRLFAHNHNDQNSVDRSGNILPGTVVDSK
ICHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSI
VPPAYYAHLAAFRARFYMEPDSSESGSLASGVRGGGAPSSSSTSRSTRAATGGAVRPLPA
LKDSVKNVMFYC
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgcctccatctgttccttgccctttttcttttagtttcttttctcgccgcggctctgtc
agtccttttcctcctggagaaacaatttcatcaagtttttcagctcactgtttcgctgcc
cccggcatgggatcgtggagaccaagaatgcctgggtttggagagggctcccaggctgct
gagcctggtggtggtgggagaggtcctggaagaggttttcgtggccgtggtgcctcctac
catcaacaattcccacaaggtggtcgtggagctggctactaccagcatggacaaggtgct
gcgtctcaacctcgtggagcaatgacgccacagcagtggcggcctgctggccctgctgca
gggtatttgggccatggtcaggcttacagagaagtgcagccaccacaaaactatggtggt
gatagaggtggacgcgggtcagctccatccgccatagctcccgagctgcgccaagcaatg
gaaacttcacatgaaccggataacatctcctcaccagaagcaggctctccagatctgtca
ccacgcgcttctactgtggaagtgacggatcagctgaaagatttgtctgtacagggtgaa
tctagtgtgggccaagagattgtgcaagcatttccggtgtctcacaattcatataagttt
cctcaccgcccgggaaatggaagtattggcaccaggtgtttggtgaaggcaaattacttc
tttgctgaactgcctgacaaggatcttcatcagtatgatgtttcaatcaccccagatgtt
acatcacgaattcggagccgttctgtgatggaagagttggtaaagctgcataagatgtca
tacttgggagggcggcttccggcctatgatggtagaaagagcctatacacggctggccca
ctgccattcacttcaaaagaatttcacattactctacttgaggaagatgatggttctggt
gtggagaggcgtcagaaaacttacaaggtggtgattaaatttgctgcaagagctgatctc
cgccgtcttgagcaatttattgccggaaggcaggcagaggctcctcaagaggctttgcaa
gttcttgacattgtcctgcgggagctgccaacagcaagatatgcaccatttggtcgatct
tttttctctcctgaccttgggaggaggcgatcccttggcgagggaatagaaagctggcga
gggttctatcagagcattcgtcctactcagatgggcttgtcattgaacattgatatgtca
gctactgctttctttgagccattacctgtgatagattttgttgcacagcttttaaatact
gatatccactcgaggcccctctcagatgctgaacgtgtcaagatcaagaaggccttaaga
ggagtgaaggtggaagttacccaccgtggtaacatgcggcggaagtatagaatagctggt
ttaacatctcaggcaactcgagagctaactttccctgttgatcaagggggcacagtgaag
tctgttgtacaatattttcaagagacatatggctttgccatccagcatacctacctgccc
tgcctgcaggttggcaaccagcagcgtccaaattaccttccaatggaggtctgcaaaata
gtggaggggcagaggtactccaagagattaaaccagagtcagataagagcccttttagag
gagacatgtcagcgcccacatgatcgggagcgtgacataattcagatggtgaatcataac
tcttaccatgaggatccttatgctaaagagtttggcattaagatcagtgagcgtttggct
tcagttgaggcacggattttacctgctcctcggctcaaatataacgagactggcagagag
aaggactgcttgccaagagttgggcagtggaatatgatgaacaagaaaatggtaaatggt
ggtagagtcaggagctggttctgtgtcaattttgctcgaaatgtgcaagagagtgttgca
agcggattctgtcgtgaacttgctcgcatgtgccaggcctcaggaatggactttgctttg
gagcctattcttccacctatgcatgcacatcctgatcaagtggagcgagctctgaaagcc
aggttccatgatgtaatgaacatgctcggaccacagcgcaaggagcttgatttgcttata
ggaatacttcctgacaacaatggttctctttatggtgatttgaagcgtgtctgcgaaata
gaccttgggatagtttcacagtgctgctgtgcgaagcaagtttttaagatgaacaaacag
atactggcaaatcttgctctgaagttaaatgtcaaggttggaggaaggaacactgtactg
gttgatgcagtgtcaagacgcattcctttggtgactgacaggcctaccatcatatttggt
gcggatgtaacccatcctcatcctggtgaagatagcagcccttccattgcagctgttgtg
gcgtcccaagattggcctgaggtgacaaagtatgctggtttagtttctgctcaatctcac
aggcaagagctaatagaggatctgtataaggtgacacatgatcctcagagaggaacaatc
tgtggtggcatgatcagggagcttcttatatccttcaaaagatcaactggtcaaaagcct
cagaggatactattctacagggatggtgtgagtgaagggcagttttaccaagttctactg
catgagctggatgcaatccgaagggcatgtgcatcgctggaagcaaattaccagccacag
gtgacttttatcgtggtccagaaacggcaccatacaaggttgtttgcacacaaccacaat
gatcagaattcagttgacaggagcggcaacatacttcctggtactgttgtggactcgaag
atctgccatcctacagagtttgacttcttcctgtgcagccacgctggcatcaagggcaca
agccgtcctgctcactaccatgtcctgtgggatgagaacaacttcacagctgatgcactg
cagacccttaccaacaacctctgctacacttatgcgaggtgcacgcgctctgtatctatt
gtcccaccagcgtactacgctcatctggctgctttccgcgcccggttctacatggagccc
gacagctcggaaagcgggtcgctggcaagtggcgtccgtggaggcggagcgccgtccagc
tcgtcgacgtcacgcagcacccgagcggccaccggcggagccgtcaggcccctccccgcg
ctcaaggacagcgtcaagaacgtcatgttctactgctga
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