Setaria viridis (green foxtail): 117852705
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Entry
117852705 CDS
T07951
Name
(RefSeq) pre-mRNA splicing factor SR-like 1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117852705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117852705
Spliceosome [BR:
svs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117852705
Complex C
U4/U6.U5 tri-SnRNP related factors
117852705
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Gene cluster
GFIT
Motif
Pfam:
PRP38
ThrE
Motif
Other DBs
NCBI-GeneID:
117852705
NCBI-ProteinID:
XP_034590804
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Position
4:complement(2144320..2148452)
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AA seq
392 aa
AA seq
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MEIQSSGRSIDVLMEKVLSVNILSSDYFKELYKFKTYHEVVDEIYHQVDHVEPWMTGNCR
GPSSAFCLLYKFFTMKLTVNQMHGLLKHPDSPYIRAIGFLYLRYVAEPKTLWAWYEPYIK
DDEEFSPGSNGKMTTMGVYVRDLLLGQYYFDSLLPRVPLPILRQVTSHLEKLKLPTKQSG
MTGDSNRHESNDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTLPSKQEKERSYDG
DRARSPPRKRRSRSRERDHDSERDRSDRDRGRYKDRDYDRRARDHSDRDHHRSSYSDRDG
ERRGREKRDRDSDRSGRSSTRRSRSRSPVRGRTEGDKHRSSPFGKAPESSNLAKLKDLYG
DATNTKNDSGDDRAHRDSGTEEVIRLGGARWR
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggagatccagtcgtccggccggtccatcgacgtgctgatggagaaggtgctgtccgtc
aacatcctctcctcggactacttcaaggagctctacaagttcaagacctaccacgaggtc
gtcgacgagatctaccaccaggtcgaccacgtcgagccctggatgaccggcaactgccgc
gggccctcctccgccttctgcctcctctacaagttcttcaccatgaagctcaccgtcaac
cagatgcacggcctgctcaagcacccggactccccctacatcagagctattggatttctc
tacctgcgatatgttgctgaaccaaagacactgtgggcttggtatgaaccctacatcaag
gatgatgaggaattttcccctggatcaaatggtaaaatgactacaatgggtgtttacgtg
cgtgatctcctccttggtcagtactatttcgacagtcttcttccacgagtgcctctccca
attctgcggcaggtcactagccatcttgagaagctgaagcttccaacaaagcagtcagga
atgacaggggattccaatagacatgaatcaaacgatactgcccgaaggcctccttctgta
aaggcttctttgtctgtctcttttggtcagcgtgctccacaccgtgcatctacaagagat
tcatccccagtccgaagaacattaccttccaaacaggaaaaagaaagaagttatgatggt
gaccgtgcaagatcaccaccaaggaagcgccgaagtaggagccgtgagcgtgatcatgat
tctgagagggaccgttcagaccgtgatcgtggcaggtacaaggatagggactatgatcga
cgagctcgtgatcacagtgaccgggaccatcatcgatcaagttattcagatagggatggt
gagaggcgaggccgtgaaaagagggacagggattctgacagaagtggacgttcaagcacc
cgcaggagcaggagcaggagtccagtccgtggcagaactgaaggtgacaaacatcgctct
agcccatttggtaaggcaccagaatcatccaacttggcaaagctgaaggatctatatggt
gatgcaacaaacacaaagaatgattctggtgatgatcgagctcacagggattctggaact
gaggaggtaatccgactgggaggcgcaaggtggaggtga
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