Setaria viridis (green foxtail): 117852870
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Entry
117852870 CDS
T07951
Name
(RefSeq) WD repeat-containing protein LWD1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117852870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117852870
03036 Chromosome and associated proteins [BR:
svs03036
]
117852870
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
117852870
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
117852870
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_CAF1B_HIR1
Beta-prop_Aladin
WD40_Gbeta
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EIPR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_WDR41
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
117852870
NCBI-ProteinID:
XP_034591050
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Position
1:complement(25262528..25264355)
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AA seq
413 aa
AA seq
DB search
MGGVGDGDAWADQEQGNGGGSRGGGGGEAKRSEIYTYEAGWHIYAMNWSVRRDRKYRLAI
ASLLEQVPNRVEVVQLDEASGDIAPVLAFDHQYPPTKTMFIPDPHAIRPDLLATSADHLR
IWRIPSADDAAAAANNNNNSGSVRCNGAPQPGVELRCELNGNRNSDYCGPLTSFDWNDAD
PRRIGTSSIDTTCTIWDVEREAVDTQLIAHDKEVYDIAWGGAGVFASVSADGSVRVFDLR
DKEHSTIIYESGSGGGGGGGSNSGAGDGGAASPTPLVRLGWNKQDPRYMATIIMDSPKVV
VLDIRYPTLPVVELHRHHAPVNAIAWAPHSSCHICTAGDDMQALIWDLSSMGTGSNGGNN
GNGNAAAAAAAEGGLDPILAYTAGAEIEQLQWSATQPDWVAIAFANKLQILRV
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgggcggggtcggtgacggcgatgcgtgggcggatcaggagcagggcaacggcgggggc
agccgcggcggcggcggcggggaggccaagcggtcggagatctacacctacgaggccggc
tggcacatctacgccatgaactggagcgtgcgccgcgacaggaagtaccgcctcgccatc
gccagcctcctcgagcaggtccccaaccgcgtcgaggtcgtccagctcgacgaggcctcg
ggcgacatcgcccccgtcctcgccttcgaccaccagtacccgcccaccaagaccatgttc
atcccggacccgcacgcgatccgccccgacctcctcgccacctccgccgaccacctccgc
atctggcgcatcccgtccgccgacgacgccgccgccgccgccaacaacaacaacaactcc
ggctccgtccgctgcaacggcgccccgcagccgggcgtcgagctccgctgcgagctcaac
ggcaaccgcaacagcgactactgcggcccgctcacctccttcgactggaacgacgccgac
ccgcgccgcatcggcacctcctccatcgacaccacctgcacaatctgggacgtcgagcgc
gaggccgtcgacacccagctcatcgcccacgacaaggaggtctatgacatcgcctgggga
ggcgcgggggtcttcgcatccgtctccgccgacggctctgtccgtgtctttgacctccgg
gacaaggagcattccacaatcatctacgagtctggttcaggtggcggtggcggtggtggc
tccaattcgggtgctggagatggcggagctgcgtcaccgacaccgctcgtcaggctggga
tggaacaagcaagacccgaggtacatggccaccatcatcatggacagtcccaaggtggtc
gtgcttgatatccgctacccgacactgccagtggtagagctgcaccgtcaccatgcacct
gtcaatgccatcgcgtgggcgccacactcttcttgccacatctgcacagctggggatgac
atgcaggcgctgatatgggacctatcatcaatgggcactgggagcaacggcggcaacaat
ggaaatggtaacgctgccgcagctgcagcagcagagggcggtcttgatcccattttggca
tatacggcaggggcagagattgagcagctgcagtggtccgcaacccagcctgactgggtt
gctattgcatttgccaataagcttcagattctcagggtctga
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