Setaria viridis (green foxtail): 117852928
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Entry
117852928 CDS
T07951
Name
(RefSeq) ubiquitin receptor RAD23d isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03420
Nucleotide excision repair
svs04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117852928
09124 Replication and repair
03420 Nucleotide excision repair
117852928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
svs03051
]
117852928
03400 DNA repair and recombination proteins [BR:
svs03400
]
117852928
Proteasome [BR:
svs03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
117852928
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
117852928
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
UBA_Ucp12
Rad60-SLD
UBA_RAD5A
Dsc3_N
STI1-HOP_DP
Rad60-SLD_2
TECR_N
Crinkler
Motif
Other DBs
NCBI-GeneID:
117852928
NCBI-ProteinID:
XP_034591126
LinkDB
All DBs
Position
4:11331069..11336577
Genome browser
AA seq
410 aa
AA seq
DB search
MKLNVKTLKGTSFEIEASPEESVAEVKKIIETTQGEVYPADQQMLIYQGKILKDDTTLES
NKVAENSFLVIMLSKAKASSSGASTAAAAKAPATPAQPAAPAVPVASVARSTPPQAPVAQ
AETAPPTAQPSPAAAAATTPAATVAASSDADVYSQAASNLVSGNNLEQTIQQILDMGGGT
WERDTVIRALRAAYNNPERAIDYLYSGIPENVEAPPVARAPASGQQTNPQAPPAQPAVAP
PVQPSAASAGPNANPLNLFPQGVPSGGANPAAGAGAGAGALDALRQLPQFQALLQLVQAN
PQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGGAGGNILGQLAAAMPQAVQVT
PEEREAIQRLEGMGFNRELVLEVFFACNKDEELAANYLLDHGHEFDEQQQ
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacgtcaagaccctgaagggcaccagcttcgagatcgaggcgagccccgag
gagtcggttgctgaggtgaagaagatcatcgagaccacccagggtgaggtctaccccgcg
gaccagcagatgctcatataccaagggaaaattctcaaggatgacaccactttggaaagc
aacaaagtggctgagaacagcttcctcgttataatgctgtccaaggctaaggcgtcgtca
agtggagcttctaccgctgctgctgcaaaagcccctgcaacaccagcccaacctgctgcg
cctgcagtccctgttgcttcagttgcaagatcaacacctccacaagcacctgttgctcaa
gcagaaacggcgcctccaactgcacagccttcacctgcagctgctgctgctactactcca
gctgctacagttgctgcatccagtgatgctgatgtgtacagtcaggcagcttcaaacctt
gtctctggcaacaatctagaacagactatccaacagattcttgacatgggtggtggtact
tgggaacgtgatactgttatccgtgctcttcgtgctgcgtataataaccctgagagggca
atagactacctgtattctggaattcctgagaatgttgaggccccgcctgttgctcgagca
cctgcatctggccaacaaacaaatccgcaagctccacctgctcagcctgcagttgcacca
ccagtgcagccatccgctgcctctgcagggcctaatgcaaatcctctaaacctttttcct
cagggtgttccaagtggtggtgcgaatccagctgctggtgccggtgcaggagctggtgcc
cttgatgccttgcgacagcttccacagtttcaggcactgcttcaattggtccaggctaat
cctcaaatcttacagccaatgcttcaagagctaggcaaacaaaacccacaaatcctacgg
ttgatccaggaaaatcaagctgagtttctccgcttggtgaatgaaagtcctgagggtggc
gctggaggaaacatactaggtcaactagcagcagcaatgccacaagcggtgcaagttact
ccggaggaacgggaggctatccagcggctcgagggaatggggttcaatcgtgagcttgtg
ctggaggtcttctttgcgtgtaacaaggacgaggagctcgctgctaactacctcctggat
catggccatgagtttgatgagcagcagcaatag
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