Setaria viridis (green foxtail): 117852997
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Entry
117852997 CDS
T07951
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1 isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04120
Ubiquitin mediated proteolysis
svs04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117852997
04120 Ubiquitin mediated proteolysis
117852997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117852997
Enzymes [BR:
svs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117852997
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117852997
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_Vps41
zf-RING_16
zf-RING_11
zf-RING_5
zf-HC5HC2H
U-box_ZFPL1
DISC1_C
Motif
Other DBs
NCBI-GeneID:
117852997
NCBI-ProteinID:
XP_034591228
LinkDB
All DBs
Position
4:complement(13794073..13798637)
Genome browser
AA seq
505 aa
AA seq
DB search
MIRLQTYAAFSLLATASAVYYAFSSRDQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQL
VKRIFLGSLREAEVERLNEQSWREVVEILFAVTIFRQDFSVSFLAMVAALLLVKALHWLA
GKRVEYIETTPSVPTLSHIRIVSFMAFLLIVDCLFLSNSLRSLIQKREASVAIFFSFEYM
ILATSTVSTFVKYVFYVSDMLMEGQWEKKAVYTFYLELISDLVHLSLYMLFFIAIFLNYG
VPLHLIRELYETFRNFKIRIADYVRYRKITSNMNERFPDATTEELNASDATCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIIPPDNGRAAAARQHGAQPGVQPAAGTG
TPASEGASGENMSRRQAKLEAAAAAASLYGRSFAYPPANNLNRSGPPQSTSSTPQAEASS
SNQSQKDQELQFQNTSNGLAPLPFNAHGAIGSGASTRDLENSLQKAQENFIKSQIEMLQI
QLQMVQRGAAALANNNENAEHTKND
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgatccgtcttcagacgtacgcggcgttcagcctgctggcgacggcgtcggcggtgtac
tacgccttcagcagccgggaccagttctacccggcgatggtctacctctccacctccaag
atctgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgtcgcctggcagctc
gtcaagcgcatcttcctggggtcgctccgggaggccgaggtcgagcgcctcaacgagcag
tcctggcgggaggtcgtcgagatcctcttcgcggtcaccatcttccgccaggacttctcc
gtctccttcctcgccatggtcgccgcgctgctcctcgttaaggcgctgcactggctggca
gggaagagggtcgagtacatcgaaaccacgccttccgtgcccacgctatcgcacatcagg
atcgtctccttcatggcgttcctgctcattgtcgactgcctcttcctgtccaactcgctc
aggtcgctcatacagaagcgggaggcgtcagttgccatcttcttctcctttgagtatatg
atactagcaacatccactgtgtcaacgtttgtgaagtatgtattctatgtcagtgacatg
ctaatggaaggtcaatgggagaagaaagcagtttatacattttacttggagctcatcagt
gaccttgtgcacttgtcattatacatgctgttcttcatagctatcttcctgaactatggt
gtcccactgcacttaattcgtgagctatatgagaccttccgcaacttcaaaattcgcata
gcagattatgtgcgctacagaaagatcacttccaacatgaatgagcgctttccagatgct
acaacagaagagctcaatgcgagcgatgctacatgtatcatttgccgtgaggagatgact
acagcaaagaagctgctttgtgggcatctgttccatgtgcattgtctaaggtcatggcta
gagcgccaacacacttgccccacgtgcagagctccaatcattcccccagataatggacgt
gcggcagcagcacgacaacatggagctcagcctggagttcagcctgctgcaggtactggt
actcctgcctcagaaggagcatcaggtgagaacatgagcaggcgccaagcaaaacttgaa
gcagctgctgcagctgcttctttatatggaagatcttttgcttatcctccagcgaacaac
ctaaataggtcaggtcctccccagtctacatcaagtacaccacaagctgaagcaagtagc
tccaatcagtctcagaaagaccaagaactgcagttccaaaacaccagcaatggtttagca
cctctgccttttaatgcacatggtgcgattggttcaggagcaagcaccagggatcttgaa
aattcactgcagaaggcacaagaaaactttataaagagccagatagagatgttgcaaatc
caattgcaaatggttcagcgtggcgctgctgcattggcaaataacaatgagaatgctgag
cacacaaagaatgactga
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