Setaria viridis (green foxtail): 117853037
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Entry
117853037 CDS
T07951
Name
(RefSeq) uncharacterized protein
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
svs04131
]
117853037
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
svs04812
]
117853037
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
117853037
Membrane trafficking [BR:
svs04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
117853037
Cytoskeleton proteins [BR:
svs04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
117853037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_5
Vps4_C
NPHP3_N
AAA_16
AAA_14
AAA_22
TIP49
Mg_chelatase
AAA_2
DUF815
AAA_25
RNA_helicase
nSTAND3
Guanylate_kin
IstB_IS21
AAA_24
TniB
AAA_33
nSTAND6
Motif
Other DBs
NCBI-GeneID:
117853037
NCBI-ProteinID:
XP_034591279
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All DBs
Position
4:1356048..1361254
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AA seq
489 aa
AA seq
DB search
MSFLRTLAETFSSLLFSSGGGAPMDAAGAAPSPAAVVGERVALKLRGYFELAKEEIDKAM
RAEEWGLPDDATAHYRNAMRVMLEAKAARVPDAVSSSERGQVRVYQEKIAKWQTQVEERL
RVLGQRSGGGAAASVVPKKVVASNLINRTAKPAPSSIQKSTLQNSPTFNRGGQASTHQRI
SSGGSKPVQKAGGSYDDKLAEMINTTIVDRSPAVKWDDVAGLDKAKQALMEMVILPTKRR
DLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEAEKLVRT
LFMVAIERQPSVIFMDEIDSVMSTRLANENDASRRLKSEFLIQFDGVSSNPDDLVIVIGA
TNKPQELDDAVLRRLVKRIYVPLPDPNVRRLLLKNQLKGQAFKLSNYDLERLAVETEGYS
GSDLRALCEEAAMMPIRELGPQNILTIKANQLRPLKYEDFKNAMTVIRPSLQKSKWDELE
KWNEEFGSS
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagctttctccgcacgctcgcggaaaccttctcctcgctgctcttctcgtcgggaggc
ggggcgcccatggacgcggcgggggcggcgccgtcgccggctgcggtggtgggggagcgc
gtggcgttgaagctcaggggctacttcgagctcgccaaggaggagatcgacaaggccatg
cgcgccgaggagtgggggctccccgacgacgccaccgcgcactaccgcaacgcgatgcgc
gtcatgctcgaggccaaggccgcgcgggtccccgacgccgtctcctccagcgagaggggc
caggtcagggtgtaccaggagaagatcgccaagtggcagacgcaggtcgaggagcggctc
agagtgcttggccagagaagtggtggaggagctgctgcttcagtagtgccgaagaaggtt
gttgcaagcaatcttattaataggacagcaaaaccagcaccaagtagcatccaaaagtct
actttgcagaatagccctaccttcaacagaggtggccaagcatctacacatcagaggatt
agcagtggaggttccaaacctgttcaaaaggctggcggaagctatgatgacaagcttgct
gaaatgattaatacaaccattgtggacagaagccccgctgttaaatgggatgatgttgct
ggtctcgacaaggcaaagcaagcactcatggaaatggttattttgcctactaaacgaagg
gatttattcaccggacttcggagacctgctaggggtttgcttctctttggtccgcctggg
aatggaaaaacgatgcttgccaaagctgttgcatcagaatctgaagcaacattttttaat
gtttcggcttcttcattgacatcaaagtgggttggagaagctgaaaagcttgtccggaca
cttttcatggttgctattgagagacaaccatctgttatttttatggatgagattgatagc
gtcatgtctacaaggttagctaatgagaatgacgctagcaggcgattgaaatctgaattc
cttatccagtttgatggggtgtcctcaaacccggatgatttagtaattgttataggggct
actaataaacctcaagagttggatgacgctgttcttcgaagactggtgaagagaatatat
gtaccactacctgatccaaatgtacggaggttacttctgaaaaatcagctcaaaggacaa
gcattcaaactgtcgaattatgatttggaaagacttgctgtggagactgaaggatattct
ggaagcgacctgagggccttgtgcgaggaagctgcaatgatgccaataagagagcttggt
ccacagaatattcttactattaaagcaaaccagttgcgacctttgaagtacgaagacttc
aagaacgcgatgactgtgatcaggccgagcttgcagaagagcaagtgggacgagctggag
aagtggaacgaggaatttggctcgagctga
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