Setaria viridis (green foxtail): 117853328
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Entry
117853328 CDS
T07951
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog A isoform X2
KO
K11267
sister chromatid cohesion protein PDS5
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
svs03036
]
117853328
03400 DNA repair and recombination proteins [BR:
svs03400
]
117853328
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
117853328
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
117853328
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
PTM_DIR17_Tudor
HEAT_2
HEAT_GCN1_C
HEAT_GCN1
LBR_tudor
WHD_HrcA
Motif
Other DBs
NCBI-GeneID:
117853328
NCBI-ProteinID:
XP_034591610
LinkDB
All DBs
Position
4:complement(12824479..12839961)
Genome browser
AA seq
1688 aa
AA seq
DB search
MAAAEQLKELGEKLQAAAPAPADELAKLLEKAAECLHGIEQSPGLSVMEAIQPSLKAVTR
EEFLKHEDEDVKVLLATCFCEITRITAPDAPYDDDVLRDIFYLIVGTFRGLSDVNSQTFG
RRVAILETVARYRACVVMLDLECDDLITDMFRTFLEVVSDSHEENIVKSMQTIMTLIIDE
SEDIQESLLRVLLSALGQKKTGAAMSGRKLARSVIAHSAGKLEPYIKKFLTSSWTGDGSS
LNDQIDHHGIVFDVYQCAPKVLKVIVPYITGELLADEVDVRSKSVELLGEIFSLPGVPIV
EHFKTLFAEFLKRLTDRVVEIRISMVEHLKRCLISDPSRAEAPEIIKALCDRLRDYEENV
RKGVVTALCDVACHSPDAIPIDTIKVVAERVRDKSLSVKCYTVERLADIYKLYCQRGPDN
SASSDDFEWIPGKILRCIYDKDFRQESIESILCASLFPPEFPTKGRVKHWVTAVTYFDKN
DMKALESILLQKQRVQQEMLKYMSLRQLSQEDAPDLQKRIVGCFRSMSRLFSDPAKCEEN
FNMLHQLKDGNIWKIFTSLLDCSSTFEKAWSLRADLLKILGEKHALYDFVGALAMKCSYL
LVNKEYAKEILSEASEQKTSGNTKLISACMNLLTAISSFFPSLLSGLEEDIIELLKEDNE
VLKEGIAHVLSKAGGNIREQLASSSSLDLLLERLCLEGTRRQAKYSVHALAAITKDDGLM
SLSVLYKRLVDLLEEKKVHLPSILQSLGCIAQISMPIFETREEEIINFITKNILECNDQD
MVENSSHKSEWGDSTQNCLLKIYGIKTLVKSYLPCKDAHAHPGIEKLFDILKNILTYGDI
SPNMVSSAADKAHLRLAAAKAVLRLSRQWDHKVPVDVFYLTLRISQDDFPQVRKLFLCKV
HQYIKERTLDAKYACAFLFGVNDYHAPQYEEFKHNLIEVVQICQQVKMRQLSVQADMNLP
TAYPEYIISFLVHGLAHDPSSPDIEEHENVKAFGPIYWRLHLILSILLGEKGLQHGVPGM
KKESFTTLISIFKSIKHSQDVVDGNKTKTLHAICDLGTLIAKRLCNDQTDLSEAQTVPLP
AQLYTPLQDNQNENSVENDEKMWLGCEKVLAHFEAVMTANVDKVKSPKHKMLIDETDEFG
NEVPLGKIVKLLKSQGEKKAGRKQKTPSSSVNAGNDDDVLGLVREINLDNQGDLGESQKS
KPKKRQTESKESNEKPLDFSSPKRKRSISNNRPHSAKGSKNSDERLLHTPNKGRTDNSLE
TKLKEKKGRHDSNDTELLVSPSSKTPVSKGNKGAKKSHTDILNSGLKKSADADSTKRTVE
PRSLNGSLKRQKPKPVSGLVKCSTHDSSSTDLVGHRIKVWWPLDKRFYQGLVQSYDSSKK
KHTVLYDDGDVEVLNLAKEKWMPVESNDSSVKKQKKDHLVTNQGRAQERTTSISKSPPSQ
QKSKKRSLPPKRKGQPKNKRRKTAGGIKSVVGSSGAGGNDSDSYNSLAHSDVDKDVESDG
QMDEEVVISSAEKEKAGKDSKDVKIKEKARKGSKDVEMKEKAGKDSKDAEMKEKVGKDSK
DVEMKEKEGKDSKTVKIKEKAVKESKDVEGKEEAGKDSKDVKMKDKSTKEPKDVEVKERA
GKDSKDVEMKEKAGKESKDVKMKQKAGKESKDAEMEEAEQQDDHSLSNKEESDNETLSVW
KKRTAKAT
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcggagcagctcaaggagctgggggagaagctgcaggcggcggcgccggcg
cccgcggacgagctcgccaagctcctcgagaaagctgcggaatgcttacatggaatagag
cagtcgccggggctctcggtgatggaagctattcaaccaagtttaaaggctgtcaccaga
gaagaatttctgaaacatgaggatgaagatgtcaaagttctcttggcgacctgcttttgt
gaaattacaagaataactgcacctgatgctccctacgacgatgatgttttaagggacata
ttctatctaattgtaggtacatttcgcggactcagtgatgttaatagtcaaacctttggc
aggagagttgctattctcgaaacagttgctagataccgagcatgtgttgtgatgttagat
cttgaatgcgacgatcttatcacagacatgtttcgaacattcttagaagttgtcagtgac
agtcatgaagaaaacattgtaaagtcaatgcagacaataatgacccttattatagatgag
agtgaagatatacaggagagtcttctgcgtgtgctgttgtcagcattggggcagaagaaa
actggggctgcaatgtccggacgtaagcttgctcgcagtgtcatcgcgcattctgctgga
aaacttgaaccatacataaagaagtttctgacatcatcatggactggggatggcagttct
ttgaatgatcaaattgatcaccatggaatcgtatttgatgtttatcagtgcgctccgaag
gttcttaaggtgatcgtgccttatattactggggaattgctggcagatgaagtagatgtt
cggtctaagtcagttgaattacttggggaaattttttctttacctggagtccctattgtg
gaacatttcaagactctcttcgctgagtttctgaagagactgactgatagagtagttgaa
atccgtatttctatggttgagcatttgaagagatgtttaatatcggatccttcccgagct
gaagctcctgaaatcattaaggcactttgtgacagattgcgtgattatgaagaaaatgtg
cggaagggagtggtgaccgcactttgtgatgtagcttgccattcacctgatgctattcca
atcgacacaattaaagtagtagcagagcgtgtccgtgataaatcgctgtctgtgaagtgc
tatactgtggagaggttggcagatatttataagctatattgccagaggggtcctgataac
tcagcaagttctgatgattttgagtggatacctggaaaaatattaagatgcatttatgac
aaagattttaggcaagagtcaatcgaatccattttgtgtgcttccttgtttccaccggag
tttccaacgaagggaagagtgaagcactgggttacagctgttacgtacttcgataaaaat
gatatgaaagctctcgaatcgattcttctgcaaaagcaaagagtgcaacaagaaatgctg
aaatacatgtcccttcggcaactaagccaggaagatgcccctgatctgcaaaaaagaatc
gttggatgtttccgaagcatgtctcgcttattcagtgaccctgcaaagtgtgaggagaac
ttcaacatgcttcatcagctaaaagatggcaatatctggaaaatattcactagcctgctg
gattgctcaagtacattcgagaaagcttggtctcttcgggcagatttgcttaagatactt
ggtgaaaaacatgcactttatgattttgtgggcgcattagcaatgaaatgttcatattta
cttgtaaacaaggagtatgccaaagagatcctgtcagaagcttctgaacagaagacttct
gggaatacaaagctcatctcggcatgcatgaatcttctaacggcaatttctagtttcttt
ccatcccttttgtctggacttgaagaagacattattgaactcctgaaggaggataatgaa
gtgcttaaagagggcattgctcatgtcttatcgaaggctggtggcaatattcgtgaacag
ctagcctcatcaagttcccttgatcttttattagagcgtttatgcttagagggcacgcgg
agacaagctaaatactctgttcatgcacttgctgcaattacaaaagatgatggtcttatg
tcactatctgttctttacaagaggcttgtggatttgttggaagagaagaaagtgcattta
ccatccatcttgcaatctttggggtgtatagctcagatatccatgccaatttttgaaacg
cgggaagaagagataataaatttcataactaaaaatattcttgagtgcaatgatcaggat
atggttgaaaattcttctcataaatctgaatggggtgatagtacacagaattgcttgctg
aagatttatggcatcaaaactttggtgaagagctatctaccttgcaaagatgctcatgca
caccctggaatagaaaagttatttgatattctgaagaatattcttacctatggtgatatt
tctccaaatatggtctcaagtgctgctgataaggcccacttgaggcttgcagcagcgaaa
gctgttctccgcttatcaagacaatgggaccacaaagtacctgttgatgtattttatttg
accctcaggatttcacaggatgattttcctcaggtgaggaaattatttctttgtaaagta
catcaatatatcaaggagaggacattggatgcaaaatatgcttgtgccttcttgtttggc
gttaatgattatcatgcccctcagtacgaagagttcaagcacaatctgattgaagtagtt
cagatatgccaacaagttaagatgcgccaactttcggtccaagcagatatgaatttgccg
acggcttacccagaatatataatttcctttttggttcatgggcttgctcatgatccttca
tccccagacattgaggaacatgagaatgtcaaagcatttggtccaatctactggcgattg
catctgattctttcaattctcctgggagaaaagggtttgcaacatggtgttccaggcatg
aaaaaggagagcttcactacattaatatctatattcaaaagtatcaaacattcacaagat
gtggttgatggaaataagaccaagactctgcatgctatatgtgatcttggtacccttatt
gcaaagaggttgtgcaatgatcaaacagatttatcagaagctcaaacagttccattgcct
gctcaactttacacaccacttcaggataaccaaaatgaaaattctgtggaaaatgacgag
aagatgtggttgggatgtgagaaagtactggcacatttcgaggctgtaatgacagcaaac
gttgataaggttaaatctcccaaacataagatgcttattgatgagactgatgaatttgga
aatgaagttcctcttgggaaaattgtcaaacttcttaaatcacaaggagaaaagaaggcg
gggagaaagcagaagacaccatcaagttcagtaaatgcagggaatgatgatgatgtcctg
ggtttagtaagagaaattaacttggacaaccaaggagatttgggggaatcacaaaagagt
aagcctaagaagcgtcagactgagtcaaaagagagtaacgagaagccacttgatttttcc
tcacctaaacgcaaaagatcgatttctaataatagaccacattcagcaaaaggtagtaaa
aacagtgatgagcgtctattgcatactcccaacaaaggtaggactgataactcattggaa
actaagttgaaggagaagaaaggcagacatgattcaaatgatacagagctgttagtttct
cctagtagtaaaacccctgtatctaaaggaaataagggtgctaagaaatcccatactgac
attttgaatagtggtctaaagaagtctgctgatgcagacagtactaagagaactgttgaa
ccgagaagtctaaatgggtcactcaaaagacagaaaccaaaaccagtttctggtttagta
aagtgctcaacgcatgattcaagcagcacagacttggtaggacaccgaataaaagtttgg
tggccgttggataagagattttatcaaggtcttgttcaatcatatgattcatccaagaaa
aaacatacggtgctatacgatgacggagatgttgaagtgcttaacttggctaaagagaaa
tggatgccagttgaaagtaatgattcatcagttaagaagcaaaagaaagaccatcttgtg
acaaaccaaggaagagcacaggagagaacaaccagcattagcaagtctccgcctagccaa
cagaagtcaaaaaagaggtccttgcctccaaagaggaaagggcagccaaagaacaaacgt
agaaagactgcaggaggaatcaagtctgttgtagggagcagtggagctggtggtaatgat
tcagattcatacaattcccttgcccactcagatgtggataaagatgtagaatctgatggc
caaatggatgaagaagtagtaatcagctcagctgagaaagagaaggctgggaaagactcc
aaagatgtgaaaataaaagagaaggcacggaaggggtccaaagatgtggaaatgaaagag
aaggcagggaaggattccaaagacgcggaaatgaaagagaaagtgggaaaggattccaaa
gatgtggaaatgaaagagaaggaaggtaaggactccaaaactgtaaaaataaaagagaag
gcagtgaaagagtccaaagatgtggaagggaaagaggaggcagggaaggactcaaaagat
gtaaaaatgaaagacaagtcaacgaaagagcccaaagatgtggaagtgaaagagagggca
gggaaggactcgaaagatgtggagatgaaagagaaggctggaaaggagtccaaagatgta
aaaatgaaacaaaaggcagggaaagagtccaaagatgcagaaatggaagaggcagaacag
caggatgaccatagtttgagcaacaaggaggaatcggacaatgaaacccttagcgtgtgg
aaaaaacgcacagcaaaagcaacatag
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integrated database retrieval system
