Setaria viridis (green foxtail): 117854137
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Entry
117854137 CDS
T07951
Name
(RefSeq) ribonucleases P/MRP protein subunit POP1
KO
K01164
ribonuclease P/MRP protein subunit POP1 [EC:
3.1.26.5
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117854137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
svs03009
]
117854137
03016 Transfer RNA biogenesis [BR:
svs03016
]
117854137
03029 Mitochondrial biogenesis [BR:
svs03029
]
117854137
Enzymes [BR:
svs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
117854137
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
117854137
Transfer RNA biogenesis [BR:
svs03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
117854137
Mitochondrial biogenesis [BR:
svs03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
117854137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POPLD
POP1_C
POP1_N
Motif
Other DBs
NCBI-GeneID:
117854137
NCBI-ProteinID:
XP_034592324
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All DBs
Position
4:complement(37386214..37391507)
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AA seq
861 aa
AA seq
DB search
MAGVPPPPRQLEVRRFASARAGELRSLHAAISSRLDDGGGRSRKQPRSERRRTTGHLPSK
RRRRWSGADAAGTGEVGPAGEGSSAPRKQSRRVRRRRELAGNPAEGFSVAGDGARRLRTH
LWHAKRFAMERRWGFVLPVGAQGRGRGSRSVLKRLKNGTIVHDASYFIPVELDGPEDSLL
SILRMVLHPSPVDKTPELKHLQDQVMRGVCYENAMLCGVGSPRSQIIGPVTYMWRPFSRE
NDKSETEGDLSTAHSFDEKSRSSLRRQLWIWIHPVALDEGLSAIRFACEKQIQDSGSVIK
CCSLEGKIGRLEVMGCKAMQSLKKMLHPIKASKINMVPDTSHKSTSTDTPPDSSTVPHLL
EASIIDHAEILQPGAILSMIVHDPREVSVQGTVSSKLVSLDKENEGLEEDVVPNADEAPS
EVGNMLSSMWMQPGKHDIFLSDCRELWDSSQSINPPVAEEVLCMEKQHERIKFFCLDSGN
DQGQTTQEKDSFSRSCPVVLLKHAKKGMPSLGWSIILPLSWVKPFWLFLVSHGAHVIGLR
ERRWIATKFRMPCFPYDYPDSKAYASYMSKEAAVFDKAVECRPAAKRPPTVPMPPLWHCI
MACFHKDDGILSGLEVDDLVRANIVLPKSLSVNSKSGDVEPSQANIASLQLHVPRTIQML
RQYVKEFDRKYLSLSSGMETDADKPYLTSDDTIKMTCSVCLTRVLIRAFKEGSFEEGAVV
CAPLPSDLPAWKIRSEEEEEECVEKWELQLPQSHVSSYFSWFDSSTGNLQLPKDDAARDA
FRWPIGFVTTGFVHGSNGQDAVAVAFCEAKLLAVLRRQQWAHKNLQSREICVLVRNARSA
AYRRSLATIILEHQESDLEFL
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgtcccgccgccgccgcggcagctcgaggtgcggcgcttcgcctcggctcgc
gccggagagctccgctccctccacgccgcaatctcatcccgcctcgacgatggcggcggc
cgctcccggaagcagccacgctccgagcgccgccgcaccacggggcacctccccagcaag
cgccgccgccgctggagcggagccgacgcagccgggaccggagaggtgggtcccgcgggg
gaggggagctccgcgccacggaaacaatcgaggagggtgaggcggcggcgggagctcgca
ggcaaccccgcggaggggttctccgtcgccggcgacggcgcgcggcggctgcgcacgcac
ctgtggcacgccaagaggtttgccatggagaggcggtggggatttgtcttgcccgtcggc
gcccaggggagagggaggggttcaaggagtgttctcaagcggctgaagaatggcacgatt
gtccatgatgctagctacttcattccagttgagcttgatggtcctgaggactccctgtta
tccattctcagaatggttctgcacccttctcctgtagacaaaacacctgagttgaagcat
ctacaagatcaagttatgcgaggtgtttgctatgagaatgctatgctttgtggtgttggg
agtcctcgttctcaaattattggaccagtaacatacatgtggcgcccattctcaagagaa
aatgacaaatcagagactgaaggagatctgtccactgctcacagctttgatgaaaaaagc
agaagttccttgcgacgccaattgtggatatggatccatcctgttgcacttgacgaaggg
cttagcgcaataagatttgcatgtgagaaacagattcaagattctggtagtgtgatcaaa
tgttgctcattagagggaaaaattggaaggctggaagtcatgggatgcaaggctatgcaa
tctcttaaaaagatgttgcatccaatcaaagcaagcaaaattaacatggtaccagataca
agtcataagtccacatcaactgatactcccccggattcctctactgtccctcatcttttg
gaagcatccattattgatcatgctgagattcttcagcctggtgctatcctatccatgata
gttcatgaccccagggaagtgtcagtccagggaacagtttcttctaaattagtctcactt
gacaaggagaacgaaggcttggaggaagatgtagttccaaatgctgatgaggcgccatca
gaggttggaaatatgttgtcatcgatgtggatgcaacctggaaagcatgatatattcctt
tctgactgtagagaactgtgggactccagccaaagcataaatcctcctgtggcagaggag
gttctttgtatggagaagcaacatgagcgcataaaatttttctgcctggattctggaaat
gatcaaggacaaacaacacaagagaaggatagcttcagtcgatcctgcccagttgttctc
ctgaaacatgccaaaaagggtatgccctctctagggtggtctatcattttacctttgagt
tgggtgaaacctttctggctttttctagtatctcatggtgcacacgtaattggcctaaga
gagagacggtggatcgcaacaaagttcaggatgccatgctttccctatgattatccagac
agcaaagcatatgcatcatatatgtccaaagaagctgctgtttttgataaagcagttgag
tgccgccctgctgccaagagacctccaacagttcctatgccacctttatggcactgtatc
atggcttgttttcataaagatgatggcatattgagtggtcttgaagtagatgacttagtg
cgggctaatattgtattacccaaaagtttgtccgtaaattccaaatctggagatgtagaa
ccatcacaagcaaacattgcatccttgcaacttcatgtgccaagaaccatccaaatgttg
agacaatatgtgaaagaatttgataggaaatatctgagtttgtcatctggcatggaaaca
gatgctgacaaaccttacttaacttctgatgacaccatcaaaatgacatgttcggtatgc
cttacaagagttctgatccgagctttcaaggaaggttcttttgaagagggtgctgttgtt
tgtgccccattaccttcagatcttccagcttggaaaatcagatcagaggaagaagaggaa
gaatgtgtagaaaaatgggaactccagctccctcagtcccatgttagttcctatttctct
tggttcgactctagcactggcaaccttcaattgcccaaagatgatgccgcacgggatgca
ttcaggtggccaataggctttgtcactactggtttcgtccatggaagtaatgggcaagat
gctgttgcggttgcattctgcgaggcgaagcttcttgcagtgctgaggcgacagcaatgg
gcgcataaaaacttgcaaagcagagagatctgtgtccttgtcaggaatgcaagatcagca
gcgtaccgacgatcgctggcgacaatcatcctggaacaccaagagtcagatctagagttt
ctgtag
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