Setaria viridis (green foxtail): 117854427
Help
Entry
117854427 CDS
T07951
Name
(RefSeq) long chain acyl-CoA synthetase 4 isoform X2
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs00061
Fatty acid biosynthesis
svs00071
Fatty acid degradation
svs01100
Metabolic pathways
svs01212
Fatty acid metabolism
svs04146
Peroxisome
Module
svs_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
117854427
00071 Fatty acid degradation
117854427
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
117854427
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
svs01004
]
117854427
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
svs04147
]
117854427
Enzymes [BR:
svs01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
117854427
Lipid biosynthesis proteins [BR:
svs01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
117854427
Exosome [BR:
svs04147
]
Exosomal proteins
Exosomal proteins of breast milk
117854427
Exosomal proteins of breast cancer cells
117854427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
117854427
NCBI-ProteinID:
XP_034592500
LinkDB
All DBs
Position
5:complement(32675690..32681398)
Genome browser
AA seq
662 aa
AA seq
DB search
MVAGSMKHLVEVEEGKEAAGGAPSAGPTYRCAAGGKGAAPPAVPGLDCCWDIFRLSVERC
PDNRMLGRREIVDGKAGEYTWLTYKQVYDTVIKVGAAIRSCGVGKGGRCGIYGANSPEWV
ISMQACNAHGIYCVPLYDTLGAGAVEFVLCHAEVQIAFVEEKKIGEMLKTFPNATKFLKT
IVSFGKVNPEHKEKVEQNGLSIYSWEEFLQLGGEEKFELPPKEKDDICTIMYTSGTTGDP
KGVLISNKSIITIVSAVDEFLINSGEELREGDVYISYLPLAHIFDRVIEEVFIHHGASIG
FWRGDVKLLVEDIGELKPTVFCAVPRVLDRIYGGLQNKITAGGFLKKTLFNVAYKYKQGN
MLKGSKHEEAAAVFDKVVFSKVKQGLGGRVRLILSGAAPLSRHVEEYLRVVTCSHVLQGY
GLTETCAGSFVSLPNNMSMLGTVGPPVPYVEVRLESVPEMGYDALSSEMPRGEICIRGDT
LFSGYYKREDLTKEVLVDGWFHTGDIGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENLEN
IFGQTPGVDSVWVYGNSFESSLVAVVNPNKQALERWAESNGVTGEFATICEDPKAKEFIL
GELTKMGKEKKLKGFELIRAVHLDPVPFDMERDLITPTYKKKRPQLLKYYQSIIDGMYRS
MK
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggtggcgggatcgatgaagcacctggtggaggtggaggaggggaaggaggcggcgggc
ggtgcgccgtcggcggggccgacgtaccggtgcgccgcggggggcaagggcgccgcgccg
cccgccgtgccggggctcgactgctgctgggacatattccgtttgtccgtggagaggtgc
cccgacaacaggatgctgggccgccgcgaaattgtcgacgggaaggctggcgagtacacg
tggctgacgtacaagcaggtatacgacactgtgatcaaggtcggcgctgcgatccggagc
tgcggcgtcggcaagggtggccggtgcggcatctatggggccaattcgcctgagtgggtt
atcagtatgcaggcctgcaatgcccatggcatttactgtgttccattgtatgacaccctt
ggtgccggggcagtagaatttgtattgtgccatgcagaggtacagattgcttttgtcgag
gaaaagaagattggagagatgctcaagacatttcccaatgcgaccaaatttttgaagaca
attgtgagctttggtaaggtcaatcccgagcacaaagaaaaagttgaacagaatggcttg
tccatctactcatgggaagagtttctgcaactgggaggtgaagagaagtttgaacttcca
ccaaaggaaaaggatgacatatgcacaataatgtataccagtggcacaaccggtgatcct
aagggagtattaatatccaacaagagcatcattaccattgtttcagcagtagatgagttc
cttatcaactcaggcgaggagcttcgcgagggtgatgtttacatttcttaccttccactt
gctcatatttttgaccgggtgattgaggaggtgttcattcaccacggtgcttcaattgga
ttctggcgtggggatgtaaaactcttggttgaagacattggagaacttaaaccaacagta
ttctgcgctgttccacgtgttctggacagaatttatggaggattgcaaaataaaattaca
gctggcggtttcttgaagaagaccttgttcaatgttgcttacaaatacaaacaaggtaat
atgttgaaaggaagcaagcatgaagaggctgctgcagtgtttgacaaggtggtcttcagc
aaggtgaaacagggactaggtggcagggttcggctgattctatccggggccgctcccctg
tctagacatgttgaggagtatctacgtgtggtgacatgttcccatgttcttcagggatat
ggactcacggagacctgtgccgggtccttcgtttccctaccaaacaatatgtccatgctg
ggaaccgtcggccctcctgtcccatacgtcgaagtacgcctggaatctgtccctgagatg
gggtacgatgcgctgtcgagtgagatgcctcgtggggagatttgcataagaggggacact
ctgttctcagggtactacaagcgagaggacctcaccaaggaagtcctggtcgacggttgg
ttccacacaggagacattggtgagtggcagcccgacgggagcatgaagatcatcgaccgc
aagaagaacatcttcaagctctcacagggagagtatgttgcggttgagaatctggagaac
atctttggtcagactcctggtgttgattcggtttgggtgtatggcaacagcttcgagtcg
agcctcgttgcggtggtgaaccccaacaagcaggctctggagcgatgggcagagtccaac
ggggtaactggagagtttgccacgatttgcgaggaccctaaagccaaagagttcatattg
ggagaactaaccaagatgggcaaagaaaagaagctcaaaggcttcgagctcatcagggcc
gttcatctggaccctgtgccgttcgacatggagcgcgacctcattaccccgacgtacaag
aagaagcggccgcagctgctgaaatactaccagagcatcattgacggcatgtacaggagc
atgaaatag
DBGET
integrated database retrieval system
